PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18152.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 526aa    MW: 57711.1 Da    PI: 8.6628
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18152.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27e-33243299360
                              -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  mrna18152.1-v1.0-hybrid 243 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHSK 299
                              9***************************************.***************85 PP
2WRKY1031.7e-32443499359
                              -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k+ver +edpk++++tYeg+Hnh+
  mrna18152.1-v1.0-hybrid 443 DGFRWRKYGQKVVKGNPYPRSYYRCTSVKCSVRKHVERVSEDPKAFITTYEGKHNHD 499
                              9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-29235300IPR003657WRKY domain
SuperFamilySSF1182905.49E-26240300IPR003657WRKY domain
SMARTSM007743.8E-37241299IPR003657WRKY domain
PfamPF031061.7E-25243297IPR003657WRKY domain
PROSITE profilePS5081123.686243300IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-34426501IPR003657WRKY domain
PROSITE profilePS5081135.094436501IPR003657WRKY domain
SuperFamilySSF1182902.75E-28436501IPR003657WRKY domain
SMARTSM007741.2E-36441500IPR003657WRKY domain
PfamPF031061.6E-25443499IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MCLNVMVFEE KGLELFQHSE DCELKLECKP DRHNTNVPNY TITQLLDMDI KEAERVVIAK  60
PVATRPTCSS FKSFTELLTG AIDAAPSNVS SETAVPAIRP KTVRFKPTAN HPVAALVSSQ  120
AETSGAAISN SAEKVSKSDS KSTVVYKPLA KVVSRATVSA LANLGNFNTS QQQTQSSVGT  180
GVVLRPNRDK SYKTQLVSNI YQKSRSCAET SQTTEPVKIV SQNMEEDAKN IPAAANSDRP  240
SYDGYNWRKY GQKQVKGSEY PRSYYKCTHP NCPVKKKVER SLDGQIAEIV YKGEHNHSKP  300
QPPKRSSSGT QGSGFASDAT GQDYNTRLWN SHLNEKNEGS EGRVEDQNEV GIPVHSYQSK  360
NIVHYDPLAT GKLNAGTATP DNSCGVSGEC EEGSKGVETE DYEPRSKRRK SENQSSEAGI  420
SGEVMQEPRV VVQSSADTEI TGDGFRWRKY GQKVVKGNPY PRSYYRCTSV KCSVRKHVER  480
VSEDPKAFIT TYEGKHNHDM PLRTANPGAS SEKDPQAPPS SKEKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-32243501877Probable WRKY transcription factor 4
2lex_A6e-32243501877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18152.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302832.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_011466633.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_011466634.10.0PREDICTED: WRKY transcription factor 44
SwissprotQ9ZUU01e-117WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A2P6RAH10.0A0A2P6RAH1_ROSCH; Putative transcription factor WRKY family
STRINGXP_004302832.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-112WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]