PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17796.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 330aa    MW: 37026.9 Da    PI: 6.1915
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17796.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.7e-11190233548
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                              kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  +
  mrna17796.1-v1.0-hybrid 190 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 233
                              8999********************************98877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-14186250IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622188240IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-11190241No hitNo description
PfamPF001703.3E-9190233IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-11190244No hitNo description
CDDcd147031.47E-23191241No hitNo description
PROSITE patternPS000360193208IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAQLPPKVPN MTPNWPDLSH HHKMSSCFAA PNGNAGSNPC WVDEFLDFSS ARRGSHRRSV  60
SDSITFLEAP MQDECRVSGA PPEPNTTRHV EFDRFDDEQF MSMFTTDEIA AAAAAGPTGS  120
CSNPSTPSDH NSINDDEQQQ IDDGDQKKKK RDNKLKHESE EAESECKLEG QQNQNGDNKN  180
TTGDRKIDPK RVKRILANRQ SAQRSRVRKL QYISELERSV TSLQAEVSVL SPRVAFLDHQ  240
RLLLNVDNSA LKQRIAALAQ DKIFKDAHQE ALKREIERLR QVYHQQNLKK MEDNNNNNIE  300
QSPNSDTITT QLPDAAAADQ KEQLLNVSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17796.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303124.10.0PREDICTED: basic leucine zipper 34
RefseqXP_011466942.10.0PREDICTED: basic leucine zipper 34
SwissprotQ9M2K41e-118BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A2P6RUF60.0A0A2P6RUF6_ROSCH; Putative transcription factor bZIP family
STRINGXP_004303124.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-109bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]