PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17794.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 745aa    MW: 83765.2 Da    PI: 7.8609
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17794.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.22.7e-33349441193
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCaaCk++r+kC+++C+lapyfp e++++f++vhk+FG+snv+k++k+++e +r+++++slv+eA +r++dPv G +g ++ +  +
  mrna17794.1-v1.0-hybrid 349 ACAACKHQRKKCSEGCTLAPYFPVERNREFQAVHKVFGVSNVTKMVKNANEANRRKVVDSLVWEALCRQKDPVLGPYGEYRMIFDE 434
                              7*****************************************************************************99999888 PP

                   DUF260  87 leqlkae 93 
                              l++ k++
  mrna17794.1-v1.0-hybrid 435 LKTYKSH 441
                              8887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.29348449IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-31349440IPR004883Lateral organ boundaries, LOB
SuperFamilySSF542111.44E-17643736IPR020568Ribosomal protein S5 domain 2-type fold
PfamPF001834.5E-26657735IPR001404Heat shock protein Hsp90 family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0006950Biological Processresponse to stress
GO:0043574Biological Processperoxisomal transport
GO:0005730Cellular Componentnucleolus
GO:0005777Cellular Componentperoxisome
GO:0005524Molecular FunctionATP binding
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MGSRGLDPVT WEQIETSESY LVCSMYEEAA SLASSILKRL SEHGQDFDEH LDLYDMLESA  60
GMVLVQSSKQ LGRTPEILNE LKLLFASIPA IPVQVLLTGV CFYISEGHYL GIRELLEVFL  120
SGWNLVGGKY YVLVGKEDSA DYTQSYNGNF VLGVDKYLEV VEVYTVNLLG TILNDVDLAT  180
SWVRNAKIPE DRRQVLLRRL HSLHSIKATN ASQQNYEDLS PEGRSKAKYP LNRDPAKKQA  240
VLNLSKRLEP CLWWFRTITL KFGNTRMVLS NGKIALGFLI LLVSYVLQRK RATLKRIVQK  300
QAMSMKNALV DLWQLAFSYQ VNPLAAVQPL AAAARMQRKC HVTPGTIPAC AACKHQRKKC  360
SEGCTLAPYF PVERNREFQA VHKVFGVSNV TKMVKNANEA NRRKVVDSLV WEALCRQKDP  420
VLGPYGEYRM IFDELKTYKS HENQTVPLQV QKGMCYKSLT DLVAWNYETN GISNGMNGGN  480
GIATTDSLDY DLQVNENMRI DSVPPYGYPL SCEQEIASEK IKQVKMAADS IVVPVVHQQG  540
HSINNINQQY YISDSGHSLS CSWPNFPSLK LNVDAAIDEL YGIRGLGDVL QNERGDLMIS  600
TSKRFRGRFS VKAAEIYVAA LGMQHDLEAL RRMGSVAVGA GIMIGNKTAM QVHNTSVTVL  660
HFKSEEELTS LDEYVENMPE TQKAIYYLAT DSLKNARSAP FLERLVQKDI EVLYFVEPID  720
EVAIQNLQTY TEKKFLIWTL ARKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-21343426588LOB family transfactor Ramosa2.1
5ly0_B3e-21343426588LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17794.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF882822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-39LOB domain-containing protein 2