PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17777.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | VOZ | ||||||||
Protein Properties | Length: 619aa MW: 69512 Da PI: 5.381 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 355.9 | 1.7e-109 | 375 | 584 | 4 | 217 |
VOZ 4 saflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 flgp calwdc+rpa+ +dyc +fhat al+eg+pg +pv+rp+gi++kd++lf+al a qgk vgip+cegaa ksp mrna17777.1-v1.0-hybrid 375 PPFLGPSCALWDCSRPAE---CGKDYCCNFHATSALEEGQPGKSPVFRPRGISVKDSALFDALIAWNQGKAVGIPNCEGAAILKSP 457 569*************96...5689************************************************************* PP VOZ 90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyein 175 wn ++lf+ls+lege++rewlffdkprraf sgnr+qrslpd+sgrgwhesrkq+mkef+g+krsyymdpqpss +whl+eye+n mrna17777.1-v1.0-hybrid 458 WNDSKLFNLSFLEGEAVREWLFFDKPRRAFGSGNRRQRSLPDHSGRGWHESRKQIMKEFDGQKRSYYMDPQPSSDQDWHLFEYEVN 543 ************************************************************************************** PP VOZ 176 eldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 ++da+alyrlelk k+s+kgkvs+ +adlqkk+g+lta mrna17777.1-v1.0-hybrid 544 NSDACALYRLELKFGSVKRSPKGKVSN-EVADLQKKMGKLTA 584 *************************86.59**********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MEKIEKMESC WRCSYLLKLN SYLRKSSGNW IVTLLLHCGE VHLGSRSTWS QEGAQSDDVL 60 SDMSLPVSLF MEENIGFAWC KEAECWRFWL YKGPVALPRD KAVARRVSMT TEAQVLRRRW 120 NARDEAVASW ASLQGFAENP NISAFRSVAI VSGEDSEERK AMIKDSKGRC ESSSHKLVKE 180 KTKNRLDQLQ ALITKKNESQ TNDTATLVEV NKMLQEWKAE LNGPSPASSL LADSLGSFSE 240 ELTRLLRTDE EDDAISPLKE FLPAKPESDL QNLHLGNLMQ FTEDFYVSPE PQELQESFQD 300 FNYCKDTASG FQDFYQCNDT ASGFQNLMVD NSGFDNHFDF HQYVNEGPFI EGNDVKQLEE 360 DAVPNVLPVI SPTEPPFLGP SCALWDCSRP AECGKDYCCN FHATSALEEG QPGKSPVFRP 420 RGISVKDSAL FDALIAWNQG KAVGIPNCEG AAILKSPWND SKLFNLSFLE GEAVREWLFF 480 DKPRRAFGSG NRRQRSLPDH SGRGWHESRK QIMKEFDGQK RSYYMDPQPS SDQDWHLFEY 540 EVNNSDACAL YRLELKFGSV KRSPKGKVSN EVADLQKKMG KLTAEVATDG ATNVKGKAKK 600 KANAGNIFSS QSPMTSTP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17777.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC166092 | 5e-34 | AC166092.4 Glycine max cultivar Williams 82 clone gmw1-93l19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303126.1 | 0.0 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-127 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2P6RUC9 | 0.0 | A0A2P6RUC9_ROSCH; Putative transcription factor VOZ family | ||||
STRING | XP_004303126.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-112 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | mrna17777.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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