PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17389.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 656aa    MW: 74723 Da    PI: 9.0229
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17389.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08598642345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                               W++  +  lv+a k ++++   +W+++a+ ++ g++ +qck ++ 
  mrna17389.1-v1.0-hybrid 598 VWSAVQERALVQALKTFPKEasqRWERVAAAVP-GKSVNQCKKKFS 642
                              6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1104.0E-2293198IPR001623DnaJ domain
SuperFamilySSF465651.83E-2094202IPR001623DnaJ domain
SMARTSM002714.3E-1595170IPR001623DnaJ domain
PfamPF002269.6E-1996175IPR001623DnaJ domain
CDDcd062571.40E-1396167IPR001623DnaJ domain
PROSITE profilePS5007618.7996178IPR001623DnaJ domain
PRINTSPR006255.0E-9101119IPR001623DnaJ domain
PRINTSPR006255.0E-9119134IPR001623DnaJ domain
PRINTSPR006255.0E-9150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.889456511IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-4458503IPR009057Homeodomain-like
SMARTSM007174.0E-5460513IPR001005SANT/Myb domain
SuperFamilySSF466895.21E-7462505IPR009057Homeodomain-like
CDDcd001678.95E-4463503No hitNo description
PROSITE profilePS512939.516594649IPR017884SANT domain
SMARTSM007172.1E-8595647IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-8595647IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-5596644IPR009057Homeodomain-like
PfamPF002494.3E-7598641IPR001005SANT/Myb domain
CDDcd001675.00E-6599645No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MGVQSKLRLI TYSEEIVDGK PIYVSSNCLP VKALGKEPAG HSFHAMALKL RGWVEEVASA  60
EEVKVADKEQ TSLPSFDSYS SSKGKKKSGG EGKQQDHYAL LGLSHLRYLA TEEQIRKSYR  120
ETALKYHPDK QASLLLAEES ESAKQTKKDE IETHFKSIQE AYEVLIDPVK RRIYDSTDEF  180
DDEIPTECAP QDFFKVFGPA FMRNGRWSVN QPIPFLGDDN TLLKEVDEFY NFWYSFRSWR  240
EFPHEEEFDL EQAESRDHKR WMERQNAKLT EKARKEEYAR IRTLVDSAYK RDPRILKRKE  300
TEKAEKQKKK QAKYLAKKLQ EEEAARAVEE EKRRKEEEDK RAAETASQQK KQREKEKKLL  360
RKERSRLRTL SGPVIFQRLL NLTEDNVESL CTSLNIEQLR SICDRMEGKV GVERAKVLRD  420
AHGGDNNDVE EKKEEEKKPP QQNGSVVSNG TVLLSSYEKK EKPWSKEEIE LLKKAMVKFQ  480
KGTSRRWEVV SEFIGTGRSV EEILKATKTV LLQKPDSSKA FDSFLEKRKP APSIASPLTT  540
RVEVEGVPST AQETESSADK SDQAEDKAGE SSSGSAKDQS PNDPNAANGS SSSSEQDVWS  600
AVQERALVQA LKTFPKEASQ RWERVAAAVP GKSVNQCKKK FSLLKESFRN KKSSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1818529513123Zuotin
5dje_B2e-1818529513123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17389.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290130.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLM5VIQ80.0M5VIQ8_PRUPE; Uncharacterized protein
STRINGXP_004290129.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain