PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16919.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 628aa    MW: 67185.7 Da    PI: 6.1987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16919.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.97e-15337388155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  mrna16919.1-v1.0-hybrid 337 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 388
                              57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.3E-4261308IPR001471AP2/ERF domain
PROSITE profilePS510329.401261302IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-7271303IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-6273303IPR001471AP2/ERF domain
CDDcd000184.42E-25337398No hitNo description
PfamPF008478.6E-10337388IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18337398IPR016177DNA-binding domain
SMARTSM003801.5E-33338402IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-18338397IPR001471AP2/ERF domain
PROSITE profilePS5103219.045338396IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MDSNSPPPPP PHHHHPQNWL GFSLSNHFSS PPHNSHLSLF EAFTSSPDTG VNSTASDHHQ  60
DAHAGATETD LSIFSGGVGT KLEDFLGGGC TTTTTAGVTT ATADVITTAS TTPTSLAPFS  120
STNDHLAVAE NEIYDSELKT IAASFLRGFS TTPTATATAP TTLQQTKTHH PVGTTETSTA  180
KKTVDTFGIG GQEDMKLIYG ITVAEEKDKA GKEGKYTLLR TNGSTPSPFL GLASVTGINE  240
GDGEEKNIIF NVKSQEKQCC RSPIQGLCIV RSGGYDKEDK AARAYDLAAL KYWGPTTTTN  300
FPVTNYEKEL TEMKNMSRQE FVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG  360
NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSIANSNL PIGGMSGKSK  420
NSSDQSLSAD SKSLDDRDLS SASSVTFASS SQQPASNSST LSFAIPIKQD PSTEYWSNIF  480
GYQVPNNNPS ANNVRNPNSV GAAPTYFHSN MDFSATSSTA TTTTETNGLF YSGIYNVHGQ  540
QQQQQQEQQQ STSSGTNNPI PYSTPLGLSS NMGYDQSSSP GYGTWIGPDD GIALRSSFPS  600
CLSAPIRDLL PLAAAFIFDH CLDNTCM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16919.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462333.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2P6QT680.0A0A2P6QT68_ROSCH; Putative transcription factor AP2-EREBP family
STRINGXP_004297880.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-96AINTEGUMENTA-like 5