PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16736.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 294aa    MW: 33289.3 Da    PI: 4.4662
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16736.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-081231462347
                              -HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqky 47 
                              +W+++a++++ gRt++++k++w+ +
  mrna16736.1-v1.0-hybrid 123 RWSLVAARLP-GRTGNDVKNYWNCH 146
                              6*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-12118158IPR009057Homeodomain-like
SuperFamilySSF466891.48E-7120154IPR009057Homeodomain-like
CDDcd001671.58E-5123147No hitNo description
PROSITE profilePS500906.202123147IPR017877Myb-like domain
PfamPF002495.1E-6123144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSEDEDSEQN GDSEASPPMR LVLAQTADGV KNEATFHCSF TSRPLAFSGP KTNPCRGIMS  60
ERFLSSGHQE FEPRDSSTTT TLQYQRVEKD GWYSMDCGRG SVAEEVHREE WRRQMASNSS  120
LSRWSLVAAR LPGRTGNDVK NYWNCHLSKK LNAQEPHDDH QKINHASNVQ VIRPQPSKYA  180
SSNSKRPMIS STLEDQPCQA LEESNRSSKA ILCSIDRDQG QIGQIVERED SNNPCVKEEQ  240
EGNNDFIGDF GMVDLDQFEQ VIEQYDQEVN NNNNKWEWDD SILDMDLWIS DSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16736.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6648111e-170KJ664811.1 Rosa hybrid cultivar R2R3-MYB (MYBs6-1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302122.11e-121PREDICTED: transcription factor MYB90-like
TrEMBLA0A068CS411e-100A0A068CS41_ROSHC; R2R3-MYB
STRINGXP_004302122.11e-121(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66390.18e-13myb domain protein 90