PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16584.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 320aa    MW: 35767.9 Da    PI: 10.0264
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16584.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30250307359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe+eH+h+
  mrna16584.1-v1.0-hybrid 250 DEYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCIEDPAMLIVTYESEHKHS 307
                              9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.92243309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-31244308IPR003657WRKY domain
SuperFamilySSF1182907.06E-26246308IPR003657WRKY domain
SMARTSM007741.7E-36248308IPR003657WRKY domain
PfamPF031067.1E-26250306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEEVEAANKA AVESCHRVLN SLICKHKDDV QCENLGVLTE EAVVKFKRVV SLLNHGRIRK  60
LKKKLDSSWP QSLMLDGPNY RSDISTKTLQ LLPATFPPNP HTQNQKVILG NPVLDMSLNL  120
PLQNVQPKPF QQLHRIPVHP QQFTGINLAF NKPSTTPSSS NAASFMSCLS MDAGRVANYD  180
SNSFRLISGC VPQPMDQISQ LMRSADVQQN SSVQCGSSEK CSTPRKRRLR VRKSFKVPEG  240
GKNVAHIPGD EYSWRKYGQK PIKGSPYPRG YYKCSSMRGC PARKHVERCI EDPAMLIVTY  300
ESEHKHSQSA HKHSQSAHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-192473061371WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226232RRLRVRK
2227236RLRVRKSFKV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16584.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275832e-35KT827583.1 Manihot esculenta WRKY transcription factor 8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302062.10.0PREDICTED: probable WRKY transcription factor 74
SwissprotQ93WU65e-83WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A2P6R5V21e-171A0A2P6R5V2_ROSCH; Putative transcription factor WRKY family
STRINGXP_004302062.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.12e-64WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]