PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna16000.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 504aa MW: 58419.4 Da PI: 5.0296

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna16000.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.3	4.7e-22	152	235	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++++etrtgC a++++++ ++++w+v++++l+Hn mrna16000.1-v1.0-hybrid 152 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----NRKKETRTGCPAMIRLRLVESNRWRVDEVKLDHN 232 69**************************************99888.....8999**************************** PP FAR1 87 Hel 89 H + mrna16000.1-v1.0-hybrid 233 HLF 235 *76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-19	152	234	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.149	385	421	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.6E-5	396	423	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MTGDDPTFSP TNRALSLSTD LHITVSPSLL ILSDYIAQSF KIEEGSQNSE QLLEDENNDL 60 GNDCEQLFGI EGNEPESERD DTSDQFFEID SNDNENDRSE LNEQLFEIQG NDHEMSGNDD 120 TVIDIQNGGS QEKVYPQPVV GLEFDSYDDA YNYYNCYAKE LGFAIRVKSS WTKRNSKEKR 180 GAVLCCNCEG FKTMKEANNR KKETRTGCPA MIRLRLVESN RWRVDEVKLD HNHLFDHERA 240 QNSKSHKKMD SGAKRKMEPT LDVEVRTIKL YRTPGTDIVG YGSSNSYEGE KFFKVYDIVL 300 ENKRQEEAHN DVESRDLNPI LRTRCYYELQ LSKFYTKDVF RKFQHEVAMM SSCFSITQVH 360 TNGPIVTYMI KEREGEEILR GVRNLEVMYD KAGAEVRCMC SCFNLNGYLC RHALCILNYN 420 GVEEIPFQYI FSRWRKDFKR LYVPDLGSNN VDITNPVQWF DHLYRRAMQV VQEGMISHDH 480 YMVCWQAFKE SLNKVRLVAD KQV*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MTGDDPTFSP TNRALSLSTD LHITVSPSLL ILSDYIAQSF KIEEGSQNSE QLLEDENNDL  60
GNDCEQLFGI EGNEPESERD DTSDQFFEID SNDNENDRSE LNEQLFEIQG NDHEMSGNDD  120
TVIDIQNGGS QEKVYPQPVV GLEFDSYDDA YNYYNCYAKE LGFAIRVKSS WTKRNSKEKR  180
GAVLCCNCEG FKTMKEANNR KKETRTGCPA MIRLRLVESN RWRVDEVKLD HNHLFDHERA  240
QNSKSHKKMD SGAKRKMEPT LDVEVRTIKL YRTPGTDIVG YGSSNSYEGE KFFKVYDIVL  300
ENKRQEEAHN DVESRDLNPI LRTRCYYELQ LSKFYTKDVF RKFQHEVAMM SSCFSITQVH  360
TNGPIVTYMI KEREGEEILR GVRNLEVMYD KAGAEVRCMC SCFNLNGYLC RHALCILNYN  420
GVEEIPFQYI FSRWRKDFKR LYVPDLGSNN VDITNPVQWF DHLYRRAMQV VQEGMISHDH  480
YMVCWQAFKE SLNKVRLVAD KQV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna16000.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024180192.1	1e-168	protein FAR1-RELATED SEQUENCE 8-like isoform X2
Swissprot	Q9SSQ4	7e-73	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2H5QDR2	0.0	A0A2H5QDR2_CITUN; Uncharacterized protein (Fragment)
STRING	XP_004305497.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	3e-75	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	mrna16000.1-v1.0-hybrid

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]