PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna15934.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 253aa MW: 27997.3 Da PI: 8.9321

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna15934.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H mrna15934.1-v1.0-hybrid 80 FSCNYCQRKFYSSQALGGHQNAH 102 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.2E-6	77	107	No hit	No description
PROSITE profile	PS50157	11.427	80	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MMDTQNQKPH KQPVAEDTEL PEQAPNPDIV FDLSLISNKE SDQRLNPELN LIDCFDSAMC 60 SETSTDDPKV AVTSHEPRVF SCNYCQRKFY SSQALGGHQN AHKRERTLAK KGVAHKIGAA 120 SDNFRLLSHR FSSMASLPLH GSFNNRSLGI QVHSTIHKPS WNQSSPYYGH NGNFLRNPID 180 QQSAIGRLHL MGSMSPSSSS SGGVGRFDSS TTRKFSPVPV AERIGGFRWN SVSHLKTTQD 240 HELPKLDLSL KL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna15934.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303255.1	0.0	PREDICTED: zinc finger protein 1
TrEMBL	A0A2P6RVK3	1e-133	A0A2P6RVK3_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004303255.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	4e-41	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	mrna15934.1-v1.0-hybrid