PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15798.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 620aa    MW: 67988.7 Da    PI: 5.0491
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15798.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.56.2e-09267286221
                              --SS-EEEEEEE--TT-SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefp 21 
                              +D ++WrKYGqK++kgs++p
  mrna15798.1-v1.0-hybrid 267 SDSWTWRKYGQKPIKGSPYP 286
                              69****************99 PP
2WRKY46.19.8e-154034412259
                              EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY  22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++YYrC+s+  Cp++k+vers++dp+++ itY  eHnh+
  mrna15798.1-v1.0-hybrid 403 KGYYRCSSSkACPARKQVERSRSDPRMLLITYACEHNHH 441
                              68*****9989***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081111.371261286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-26262286IPR003657WRKY domain
SuperFamilySSF1182902.48E-6264286IPR003657WRKY domain
SMARTSM007741.7E-20266442IPR003657WRKY domain
PfamPF031061.1E-4268286IPR003657WRKY domain
SuperFamilySSF1182906.15E-11402443IPR003657WRKY domain
PfamPF031066.6E-11403441IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-26403443IPR003657WRKY domain
PROSITE profilePS5081118.636403443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKPNVLNKLS DGGQINAILR LIHCSLVIQL QRYGSDSHST DICGCYDDEY DDDDDDDDDD  60
NDYDCYYDDD YDGYYDDDVR TSAPLYGAEF PLFATVRRRR GRASTLADSS SFPNHFPSSA  120
SSPNSSFPAR LILFEVLGDL VGKLEFGGLV GDGKWSGKLL ESAGVEACPR RCGRPYLKRT  180
ENLVVRLFIM EEYNPGFYRN PVFSDPQEAE TVSENDPDSP SSGEETKVFT TAPSPKKRRG  240
VVQKRVVSVP IREMEGSKGK GDGNPPSDSW TWRKYGQKPI KGSPYPSVGT NMKSPPNHKG  300
STEDSPPSSC TDELVRFSSC LSYVASPLKN LSDSPASKCC DPFLGAVSEL GGDWAGVCRP  360
AVLAGACSVE WGAPGSVEEA GVQPSGKVGA QRRHMGCPEH DFKGYYRCSS SKACPARKQV  420
ERSRSDPRML LITYACEHNH HMPTTKGSHS AALTDPVNAT SPTKEFELPD RVAPIEELTP  480
IASQVDLELS GDSGALLGDN GWFDDMETTI VLESSFCVGN SDLVDMDVAM RLEHEDEYLF  540
ADLGELPESS VIFRHRKLNS DEQNQRRSRH LGAPKSPCPP RSAKARLYLT FCDKPLGRAL  600
RRNGEATPRH TLSLSAPLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15798.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.19e-26WRKY DNA-binding protein 65