PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15389.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 306aa    MW: 34079 Da    PI: 5.7065
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15389.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-171466148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                             +g WT+ Ed++l+d+vk++G g W +I+r+ g     ++R++k++++rw++yl
  mrna15389.1-v1.0-hybrid 14 KGVWTAREDQILIDYVKKHGEGKWGKISRETGkfcvcLRRCGKSVRLRWLNYL 66
                             799************************************************97 PP
2Myb_DNA-binding48.81.7e-1573116247
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              g+  ++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  mrna15389.1-v1.0-hybrid  73 GNIAEDEEELIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNST 116
                              666689***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.522966IPR017930Myb domain
SuperFamilySSF466895.14E-2811113IPR009057Homeodomain-like
SMARTSM007172.1E-141368IPR001005SANT/Myb domain
PfamPF002498.3E-151466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-211673IPR009057Homeodomain-like
CDDcd001675.30E-111766No hitNo description
PROSITE profilePS5129424.94967121IPR017930Myb domain
SMARTSM007171.1E-1471119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2474122IPR009057Homeodomain-like
PfamPF002491.3E-1374116IPR001005SANT/Myb domain
CDDcd001672.01E-1077117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRSSRFEKE DMKKGVWTAR EDQILIDYVK KHGEGKWGKI SRETGKFCVC LRRCGKSVRL  60
RWLNYLRPGI KRGNIAEDEE ELIIRLHKLL GNRWSLIAGR IPGRTDNEIK NYWNSTLRRK  120
LQQQNHSNET KENSLSPRRS GGAAEEDEPE KDEPHSTTNN GGVGGGGGMI KPTSLYCFTN  180
HSVREEDIQR YHLGSTSTTT CTANNTTLFP GGPTVEAEAK KTDIELAGDD LSDDVMWNDF  240
IMDLNEGQLD ISEFLQTDFP KLCESESPMN VDVGGCSTTN HELPNNWEGG RSLVAATAAA  300
ESCLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27111214108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15389.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305611.10.0PREDICTED: transcription factor MYB82-like
TrEMBLA0A2P6Q1J51e-148A0A2P6Q1J5_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004305611.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-53myb domain protein 3