PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15095.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 367aa    MW: 40741 Da    PI: 6.831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15095.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.78e-18141178128
                      NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                              h td+el   +L+k ++g++l+  +vi++v+ y++ P++Lp          +++  r+++       ++ t+ gyW+ t +  +++
  mrna15095.1-v1.0-hybrid  14 HCTDKELC-MFLQKLTSGSPLPR-NVINDVNPYNYMPSNLP-----P--GSFWYLIRSNE-------SKDTSLGYWSPTEEACKIF 83 
                              779****9.99**********99.99**************9.....2..34555555443.......345789************* PP

                      NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              + ++  +g ++tL fy+g+ap+  kt+W m+eyr+
  mrna15095.1-v1.0-hybrid  84 T-DSVITGWRNTLEFYEGQAPHEYKTNWRMQEYRI 117
                              *.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-236137IPR003441NAC domain
PROSITE profilePS5100523.7747140IPR003441NAC domain
PfamPF023655.7E-914117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MRPQAVLPAD IGVHCTDKEL CMFLQKLTSG SPLPRNVIND VNPYNYMPSN LPPGSFWYLI  60
RSNESKDTSL GYWSPTEEAC KIFTDSVITG WRNTLEFYEG QAPHEYKTNW RMQEYRITYH  120
KVSENSKTKE ANLLCRVQSV GAECKNPIAN CFSQPVVSLA ETCTGHASTS KPQVIKDNET  180
GTLTVTERLP DHQVEIMPEI EIDFPFGDDY IELRDLDRPA SFSSSSNSSC LTMSSDECFD  240
SLALLEELEP KTSQDQANKN AGCKYSISVS QKPDELVMYA AASSSGSLNK SPNEEKVKSH  300
SSKIPSSAVC VKNKEKTTKK LSRNEMPDQG NEAISNSHTA TPPGGKKATV VKTKKLKKRY  360
LCFMPC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15095.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291902.10.0PREDICTED: NAC domain-containing protein 74-like
RefseqXP_011459571.10.0PREDICTED: NAC domain-containing protein 74-like
TrEMBLA0A2P6PYK50.0A0A2P6PYK5_ROSCH; Putative transcription factor NAM family
STRINGXP_004291902.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105882235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.14e-16NAC domain containing protein 96