PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15014.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 383aa    MW: 42303.4 Da    PI: 6.7312
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15014.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.65.1e-28197255158
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                              ++Dg++WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv++sae+p +++ tYegeHnh
  mrna15014.1-v1.0-hybrid 197 VKDGFQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQKSAENPCFLVATYEGEHNH 255
                              58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-26188258IPR003657WRKY domain
PROSITE profilePS5081125.339192258IPR003657WRKY domain
SuperFamilySSF1182902.48E-23193257IPR003657WRKY domain
SMARTSM007742.6E-31197257IPR003657WRKY domain
PfamPF031069.6E-23198255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDSSKWVNTS LGLNLVPVDS HHAMDQDQPP LPMFTKQVEE FEGEYAIFES NLRSPKQEQT  60
GAGAGGTVLM AEELNRITLE NKKLTQMLAV LCENYNALET HVKELRTNKQ LPSENELISS  120
GNTCSLAKKR KSPGNDHQDY CNNVNMIGFS TNTISTAETS SSDEESYKRP KEMMSDMNLK  180
ISRAYVRCDV SDTRLIVKDG FQWRKYGQKV TRDNPSPRAY YKCSFAPSCP VKKKVQKSAE  240
NPCFLVATYE GEHNHIHPAG PQVITIDHQG HSSNIFAPKI SSSPSSSPTS TVSTMSMSSS  300
CVLDSSTEPG SSFGHKPNQG REAFDDQYDE KATNFPQLLV QQMASSLTKD PNFTTALAAA  360
ISAGRFNILD QLPQPHPPIP KW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-181962601376WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15014.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459611.10.0PREDICTED: probable WRKY transcription factor 40 isoform X1
TrEMBLA0A2P6PY890.0A0A2P6PY89_ROSCH; Putative transcription factor WRKY family
STRINGXP_004291954.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-59WRKY DNA-binding protein 40