PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14942.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 158aa    MW: 17845 Da    PI: 4.6758
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14942.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.4e-133191363
                             XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                             +l++ +r+ +NRe+ArrsR RK++ +  L+  v  L +eN +    ++  ++++ +l++e+
  mrna14942.1-v1.0-hybrid 31 DLRKRKRMVSNRESARRSRMRKQEHLTDLTAQVGLLRKENNQILTSINVTNQLYLNLEAEN 91
                             58999*******************************************9999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-132993IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.9333178IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.62E-123287No hitNo description
PfamPF001702.7E-103290IPR004827Basic-leucine zipper domain
CDDcd147022.03E-173484No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-934108No hitNo description
PROSITE patternPS0003603651IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MATSSGNSSG SSALQIMNSG SDQEGLHQVM DLRKRKRMVS NRESARRSRM RKQEHLTDLT  60
AQVGLLRKEN NQILTSINVT NQLYLNLEAE NCVLRAQVAE LTNRLQSLND IVDCIDSTKW  120
LLDNEEEEDM TAQFGGDEFL NPWSNLCFNQ PVDMFMC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14942.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287866.11e-113PREDICTED: ocs element-binding factor 1-like
SwissprotC0Z2L51e-40BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A2P6RM565e-93A0A2P6RM56_ROSCH; Putative transcription factor bZIP family
STRINGXP_004287866.11e-112(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-40basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]