PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14780.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 620aa    MW: 67972.4 Da    PI: 5.5768
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14780.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.11.1e-1082516192374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               ++Ll+cA++++s + e+a + L rl+e +s++gdp++R+++ fteAL +r++   +++++a   s      +++ + ++k+++++
  mrna14780.1-v1.0-hybrid 251 LKALLDCARVIES-EPERAIKSLVRLRESVSERGDPTERVTFRFTEALYSRVSPPPDKTSAAYDGSC-----EEDFTLSYKALNDA 330
                              689******9998.6788888999******************************5555554444433.....5689999******* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAe 170
                              +P+ kf+hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g   + +l +tg+rL +fA+
  mrna14780.1-v1.0-hybrid 331 CPYSKFAHLTANQAILEATERATKIHIVDFGIVQGVQWAALLQALATRSTGKPsKIRISGIPAPSLGnsPAASLFATGNRLCEFAK 416
                              *************************************************666659*********999889999************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                               l+++fef++ v + +++l+ + +rv+p+E laVnl+lqlh+lldes++  +   + L l k l+Pk+v++ e ea++n+  F+ r
  mrna14780.1-v1.0-hybrid 417 LLELNFEFEP-VLTPIQELNESCFRVDPDEFLAVNLMLQLHNLLDESTTGVE---AALTLAKLLNPKIVTLGEYEAKLNRVGFMSR 498
                              **********.799******************************99999888...9****************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                              f  al+yy a+f+sle +++r+s er  vEr llgr+i +vv +e++  +r+r e +e+W+  +e+aGF+pv+ls++a++qak ll
  mrna14780.1-v1.0-hybrid 499 FKTALKYYKAMFESLEPNMARDSPERLQVERLLLGRRIASVVGAEESGtKRQRLEDKEQWKFLMESAGFEPVTLSHYAVSQAKILL 584
                              ******************************************998887699*********************************** PP

                     GRAS 342 rkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                               +++ +  y++ e+   ++ l Wk+ pL++vS+Wr
  mrna14780.1-v1.0-hybrid 585 WNYSyNASYSLIESPPGFLsLAWKEVPLFTVSSWR 619
                              ****9999999888766666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.405224597IPR005202Transcription factor GRAS
PfamPF035143.7E-106251619IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQH HHHQHDQHNQ LSSGFSLSAP WPGNTHHAPT  60
LGYGLAGSGF PDPFQLPGSS DSTVGEPGFP FPNLDHHHHH HNPSSTGFRF SDLGGAAEFD  120
SDEWMDSIIG GGDSTDSSNL PSVCDAWQSN AADFGLYASD PFVPCPSRLS APCSSPSDLN  180
RVIYAESQNQ KTTSLQPQLP PAWTPPPLPP PPPQPSSIAV KDAKSVNPAP QNDAVGVSSR  240
SPEIESAPPL LKALLDCARV IESEPERAIK SLVRLRESVS ERGDPTERVT FRFTEALYSR  300
VSPPPDKTSA AYDGSCEEDF TLSYKALNDA CPYSKFAHLT ANQAILEATE RATKIHIVDF  360
GIVQGVQWAA LLQALATRST GKPSKIRISG IPAPSLGNSP AASLFATGNR LCEFAKLLEL  420
NFEFEPVLTP IQELNESCFR VDPDEFLAVN LMLQLHNLLD ESTTGVEAAL TLAKLLNPKI  480
VTLGEYEAKL NRVGFMSRFK TALKYYKAMF ESLEPNMARD SPERLQVERL LLGRRIASVV  540
GAEESGTKRQ RLEDKEQWKF LMESAGFEPV TLSHYAVSQA KILLWNYSYN ASYSLIESPP  600
GFLSLAWKEV PLFTVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1442496193375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14780.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287903.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2P6RMG30.0A0A2P6RMG3_ROSCH; Putative transcription factor GRAS family
STRINGXP_004287903.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein