PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14763.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 612aa    MW: 67366.6 Da    PI: 9.5505
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14763.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.7e-2080114135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  mrna14763.1-v1.0-hybrid  80 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 114
                              ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.94374110IPR000679Zinc finger, GATA-type
SMARTSM004016.3E-1974129IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-1377117No hitNo description
Gene3DG3DSA:3.30.50.102.0E-1678114IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.69E-1479111No hitNo description
PfamPF003201.9E-1780114IPR000679Zinc finger, GATA-type
PROSITE patternPS00344080105IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MYSFASPSSV DCTLSLGTPS TRLTSDEGND DKRGGRHERR SVSNFCWDLL QPKHASSAPK  60
NGSGNRGGGG NGDSLLARRC ANCDTTSTPL WRNGPRGPKS LCNACGIRFK KEERRATAAA  120
ATSANGATSS GSHSWMNNSQ AQKMHCYAPS MNGNEFRFME DHDMMTSHET ADAAAAGIPF  180
LSWRLNVTDR PSLFRCPFSP SPAVHGRDLS FDSEKSILLY ARVSLQDCAL IRHILKVYED  240
ASGQQVSLQK SSVTFSGSVL PVLQQSLVDY LGMPIVAAHD KYLGIPTRVG RSQNDTFAYI  300
KDNLTKKLTG NSINFVPNFG GVEHMRKKEC IRGLGMLCVN RKQKEDTLRN GIQRLIGDGM  360
LTNVWADPWL MGENLLPFFS NIVTRVSDLF VSPGVWDVAL LSHLFTFHIV HKIQALPISS  420
RSHFNKWIWA PDRKGLFTVK SAYHLARTRV LEDHVMAPNP SAQLWNKIWN APVPGKATDV  480
VPFTLGWWEE FKSAIVKSRG CNVSPRDRWI TPSLGYIKLN VDAAYNNASG MTSLGGVFRD  540
HTVAIQHNLY SLTTETNCLV LVSALTSGSL DDSDLGFLIE DLRASLSTIT ATVRFVRRSA  600
NRVAYVIAKG F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14763.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_004305638.11e-141(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.15e-41GATA family protein