PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14711.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 527aa    MW: 59565 Da    PI: 6.4353
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14711.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.54.1e-47972222128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 
                              p+G+rF+P+deelv +yL+kk+ +++l+  + i ev++y+++P++L  k+++ +ekewyfF++rd+ky++g+r+nra+ +gyWkat
  mrna14711.1-v1.0-hybrid  97 PAGYRFNPRDEELVRYYLQKKIMDEPLPP-NKIMEVNLYRYNPETLAGKYDTyGEKEWYFFTPRDRKYRNGQRPNRAAGDGYWKAT 181
                              89************************999.77**************9544443889****************************** PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g dk+++s ++ +vg +k Lvfy+g+ pkg+kt+W+mheyr+
  mrna14711.1-v1.0-hybrid 182 GADKSIKS-GNIEVGFRKALVFYRGKPPKGKKTNWIMHEYRV 222
                              ********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-5794248IPR003441NAC domain
PROSITE profilePS5100555.396248IPR003441NAC domain
PfamPF023657.4E-2697222IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MSSPSKSPTM EPPVQQSHPH PKASNSVTEA TADSGSPSPK PLQKNPHEAA ARTHHHVAHN  60
NGASSVDHHR FSDEEEELNN FNNNQKKQQD AFLSSFPAGY RFNPRDEELV RYYLQKKIMD  120
EPLPPNKIME VNLYRYNPET LAGKYDTYGE KEWYFFTPRD RKYRNGQRPN RAAGDGYWKA  180
TGADKSIKSG NIEVGFRKAL VFYRGKPPKG KKTNWIMHEY RVPDSRTAKR TGNDMRLDNW  240
VLCRIYKKAN NKNKIQTRNH AVDPGEEHIS MSITDDTEME MNGQVDDTQT TESEEEYTHT  300
IAHPPLEFDG AYPTFAYHYT SYPGVAALDN NMLQPVVMSY KDGYANIFPS LQTSGSSSAL  360
QCLDQNGKVP ISHHKLHPVD ITSKSIVCKE EASDQMYGVQ FPNQKFMQSI EGITSNSTVC  420
TDEACSDQQY GMQFPSQEYI VHSLDGRAQT KTHSCGKSVR PGDAVDFGPP SVPYLDQTSI  480
QQKIGKPLLL PSSDGLQYII EESNDEHDNL FFDCPHFTYS EPFPWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-529525416171NO APICAL MERISTEM PROTEIN
1ut4_B2e-529525416171NO APICAL MERISTEM PROTEIN
1ut7_A2e-529525416171NO APICAL MERISTEM PROTEIN
1ut7_B2e-529525416171NO APICAL MERISTEM PROTEIN
4dul_A2e-529525416171NAC domain-containing protein 19
4dul_B2e-529525416171NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14711.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293170.20.0PREDICTED: uncharacterized protein LOC101294338
TrEMBLA0A2P6QFQ60.0A0A2P6QFQ6_ROSCH; Putative transcription factor NAM family
STRINGXP_004293170.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.16e-63NAC-like, activated by AP3/PI