PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13813.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 463aa    MW: 51430 Da    PI: 7.7021
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13813.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.7e-12325350126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              y   +C+++ +tG+C yGd+CkF+H+
  mrna13813.1-v1.0-hybrid 325 YQPDICKDYKETGYCGYGDSCKFMHD 350
                              66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.88E-9322355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878324352IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7324351IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10325350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-12325355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.9E-13395443IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.14E-12401445No hitNo description
PfamPF139204.0E-8401442No hitNo description
CDDcd001623.21E-7402443No hitNo description
SMARTSM001842.3E-4402439IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.616402440IPR001841Zinc finger, RING-type
PROSITE patternPS005180417426IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MAIDPLIVSS SNCNYLIIKL FPTSLSSVSS LFPSPASSCL YSLSRSLRIQ KKISDARTTS  60
VGAVLRLAPP VVATEATQGL KCDETTLFPC KGWSLTLDLQ LVSRLESFVG VTLLLRRRYR  120
AIVDDRLSWT TSLGNLICWT CFSCIYMADS GGDAEPGEVC NFFRKPKKNF RKRTAEAEDD  180
EESNSGSAVL PSQRKAAKPD GKLFFSSGTS KSSASDDGKV ILEFKSSKEI QVEHDSRATA  240
TLETETEFSR DARAVRERVL KQSEEALKGG GKSTGNEKVY KGIHGYTDHK AGFRRELTVA  300
SEKAGGSHGP LRASAHIRAS TRFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQM  360
EREWDEAEKV RKRNLALREA GEEVDDDDGD EDEDDDSLPF ACFICRQPFV DPVVTKCSHY  420
FCEHCALKHH SKNKKCFVCN KPTLGIFNTA HEIRKRIAAE GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-6315845313313RING finger protein 113A
5z58_M4e-6315845313313RING finger protein 113A
6ff4_t4e-6315845313313RING finger protein 113A
6ff7_t4e-6315845313313RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13813.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302580.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_011466432.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-154C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2P6RGH30.0A0A2P6RGH3_ROSCH; Putative transcription factor C3H family
STRINGXP_004302580.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-142C3H family protein