PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna13545.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 291aa MW: 33012 Da PI: 8.426

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna13545.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.9	2.3e-33	26	80	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl mrna13545.1-v1.0-hybrid 26 KPRLRWTPDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 80 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.91	23	83	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-32	23	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-24	26	81	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.63E-16	26	83	IPR009057	Homeodomain-like
Pfam	PF00249	3.0E-9	28	79	IPR001005	SANT/Myb domain
Pfam	PF14379	4.3E-22	132	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MSYNYGGNGE ESCPYENGVM MTRDPKPRLR WTPDLHDRFV DAVTKLGGPD KATPKSVLRL 60 MGLKGLTLYH LKSHLQKYRL GQQTRKQNSS EQGRENNGDS FVHFSNHHST ESTTKSSRGN 120 SEQGKTQNRT IPLSEAIKCQ IEVQNKLQEQ LEVQKKLQMR IEAQGKYLQA ILEKAQKGLS 180 VDMKGPITAE TTRAQLTDFN LALSNFMENM SEEERRVSML EMNEAYKKSN GPTFQIYEEG 240 NIAEENKDSK LKVERGSIHF DLNTKGSYDY VGSNGNEFEP RCFRLQDSSL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna13545.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011465067.1	0.0	PREDICTED: myb family transcription factor APL
Swissprot	C0SVS4	9e-86	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2P6PAV4	0.0	A0A2P6PAV4_ROSCH; Putative sterol 14-alpha-demethylase transcription factor MYB-HB-like family
STRING	XP_004301640.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-74	G2-like family protein

Link Out ? help Back to Top
Phytozome	mrna13545.1-v1.0-hybrid

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]