PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13443.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 530aa    MW: 59827.3 Da    PI: 4.3649
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13443.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1358e-421545271374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayf.teALaarlarsvselykalppsetseknsseelaalklfs 85 
                              l++lL + Ae +++g++el + +   +++ asp g+++ Rla+ +  eA   +  +     ++ l  +++   + ++   a++lf+
  mrna13443.1-v1.0-hybrid 154 LRHLLKAYAESMENGQKELEEVIFRCIKDKASPIGQTLDRLAFNLcREAVDDQQGD-----VDYL--KQQ---SYKNFEPAFELFY 229
                              689***************************************96515666666555.....2222..233...356777899**** PP

                     GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLa 166
                              + +P+ kf+h +aN+aIlea+ ++ e+vHi+Dfd+++GlQ   +++aL +R +    l++T+++ ++++     + +  e +++L+
  mrna13443.1-v1.0-hybrid 230 QNFPYGKFAHYAANSAILEAIPEDtEMVHIVDFDMGEGLQLSQMIEALEQRLKT---LKVTAIKWEDEEsgcaLQGTFGERKKQLQ 312
                              *********************88879*************************765...*******9888856665666678899*** PP

                     GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvv 239
                              k A+++g++++ + +   +ledl  e  ++k+   +E la n++++l ++ ++   ++s   e+L+l k+l          +  +v
  mrna13443.1-v1.0-hybrid 313 KHARSFGLNLKVEEV---ALEDLVAEIKKTKKravREFLAFNCMVSLPHMRRR--RSRSLVIEFLRLAKDLlatsgnyktgKTGIV 393
                              *************97...66676333333444569************999743..33344569999999984444433333456** PP

                     GRAS 240 vvveqe.adh..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                              ++ + e +++  n+ +F   f   l +y al +s+e+++p++  e+r+++E+ +l++ ++     ++ +  +++ +++ W      
  mrna13443.1-v1.0-hybrid 394 TFGDGEaCERlgNQLDFSSFFDGNLVHYQALSESIESNFPSHLaEARMVLENIFLAPYVSPQTWFQNWSEMKENSHVQPW------ 473
                              ****99766678999*************************98779****************9999999999999999999...... PP

                     GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                               G++  +ls+++  +ak ++   +s g ++  ++ ++++l W+++pLv vS W+
  mrna13443.1-v1.0-hybrid 474 LGLEGRKLSTENLLEAKEIVGDESSYGIKIGgKNGNEMTLEWRENPLVRVSTWE 527
                              7***********************99***9956677888**************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.934128506IPR005202Transcription factor GRAS
PfamPF035142.8E-39154527IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEYPSWPFHN MVNSSFDQSD LMNIVDSQIG SSDFSSLVLN SDVFSDLSET CSYPLATVFC  60
GDDLIQVSSQ LEEFPMNLEE IDHDLMIECL YGNFLENNGG TLLSQEVSTR FSIEGDCLSD  120
SLVTCEVSSM DSTSILTSQT APPELVDIDN ESGLRHLLKA YAESMENGQK ELEEVIFRCI  180
KDKASPIGQT LDRLAFNLCR EAVDDQQGDV DYLKQQSYKN FEPAFELFYQ NFPYGKFAHY  240
AANSAILEAI PEDTEMVHIV DFDMGEGLQL SQMIEALEQR LKTLKVTAIK WEDEESGCAL  300
QGTFGERKKQ LQKHARSFGL NLKVEEVALE DLVAEIKKTK KRAVREFLAF NCMVSLPHMR  360
RRRSRSLVIE FLRLAKDLLA TSGNYKTGKT GIVTFGDGEA CERLGNQLDF SSFFDGNLVH  420
YQALSESIES NFPSHLAEAR MVLENIFLAP YVSPQTWFQN WSEMKENSHV QPWLGLEGRK  480
LSTENLLEAK EIVGDESSYG IKIGGKNGNE MTLEWRENPL VRVSTWEKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-1323352788375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13443.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305115.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P6R8W10.0A0A2P6R8W1_ROSCH; Putative transcription factor GRAS family
STRINGXP_004305115.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-21GRAS family protein