PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13442.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 542aa    MW: 61584 Da    PI: 4.4271
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13442.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS147.71.1e-451655382374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++lL ++Aea++ g++el++ +L  +se asp+g++++Rla+ + +     +++++++  + l+ +     + ++  aalk+f + 
  mrna13442.1-v1.0-hybrid 165 RHLLQAFAEAIEYGQKELVEVILRCISEKASPTGEAFERLAFNLCQ----EVVDEQQQGGDYLKQE-----SLKNFEAALKVFIQN 241
                              89***************************************98654....5555444444444333.....366788999****** PP

                     GRAS  88 sPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLak 167
                              +P+ +f+h +aN+aIl+a+  e e+vHi+Dfd++ G+Q   +++aLa+R +   +l++T+++ +e++      + + eet+++L++
  mrna13442.1-v1.0-hybrid 242 FPYARFAHYVANSAILDAIPVEaETVHIVDFDMGDGIQLSQIIEALAQRFK---TLKVTAIKWEEEEsdcapAHWRFEETKKQLQN 324
                              *******************99989*************************66...5******99887788999999*********** PP

                     GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvv 239
                               A+++g++++ + +   ++edl +e  + k+    +E la n++ +l ++ +++     +  e L+l k+l          ++ ++
  mrna13442.1-v1.0-hybrid 325 HARSFGLNLKLEEV---AMEDLVTEIKKAKKrgggKEFLAFNCMNSLPHMRRRKSRR--HVMEYLRLAKELlassgnskttKSGII 405
                              ************98...555553332233335678************9998333322..2345555544432222222222889** PP

                     GRAS 240 vvveqeadh...nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                              ++++ +a+    n++sF   f e l +y al++s+e ++p++  e+r+++E  ++++ +++    ++   +++  +++ W      
  mrna13442.1-v1.0-hybrid 406 TFADGNASEnleNHSSFSSFFNENLVHYQALLESMELNFPSHLaEARMVMECIFIAPFVSSQDWFQQWI-EMKDFHVQPW------ 484
                              ****99654237899*************************99868999999997777665443333333.2233334444...... PP

                     GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                              +G++  +ls+++ ++ak ++   +s g r+e  +++++vl W++ pLv vS W+
  mrna13442.1-v1.0-hybrid 485 FGLEGRRLSKENLMEAKEIVGDEGSYGIRIEgRNRNEMVLEWRGTPLVRVSTWE 538
                              8******************************66689999**************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.671138541IPR005202Transcription factor GRAS
PfamPF035143.9E-43165538IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MEYSPFLERS WSFQSLIDSS FDQSAEFINM DHTPIDSSDF SSLFINSNEF SEISEITSYP  60
FANLFTAADD LIQVTSQGEE VSMDLEGCEA DLMIEGFLCN SLEVSEGSFP SQKASSHQFS  120
TEGNDVWSPD SLVTSEASSM DSTSIQSPLT FPREEERIEN ELSIRHLLQA FAEAIEYGQK  180
ELVEVILRCI SEKASPTGEA FERLAFNLCQ EVVDEQQQGG DYLKQESLKN FEAALKVFIQ  240
NFPYARFAHY VANSAILDAI PVEAETVHIV DFDMGDGIQL SQIIEALAQR FKTLKVTAIK  300
WEEEESDCAP AHWRFEETKK QLQNHARSFG LNLKLEEVAM EDLVTEIKKA KKRGGGKEFL  360
AFNCMNSLPH MRRRKSRRHV MEYLRLAKEL LASSGNSKTT KSGIITFADG NASENLENHS  420
SFSSFFNENL VHYQALLESM ELNFPSHLAE ARMVMECIFI APFVSSQDWF QQWIEMKDFH  480
VQPWFGLEGR RLSKENLMEA KEIVGDEGSY GIRIEGRNRN EMVLEWRGTP LVRVSTWENQ  540
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370375MRRRKS
2370377MRRRKSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13442.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305116.20.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P6R8W60.0A0A2P6R8W6_ROSCH; Putative transcription factor GRAS family
STRINGXP_004305116.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.17e-17GRAS family protein