PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13016.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 194aa    MW: 21921.3 Da    PI: 5.342
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13016.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.1e-15127171347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               W++eE++l++++ +++G+g+Wk+I+r+    R + q+ s+ qky
  mrna13016.1-v1.0-hybrid 127 VWSEEEHKLFLQGLEKYGKGDWKSISRHCVVSRNPTQVASHAQKY 171
                              7*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.9963489IPR017877Myb-like domain
SMARTSM007170.623891IPR001005SANT/Myb domain
SuperFamilySSF466892.51E-64196IPR009057Homeodomain-like
CDDcd001670.003724285No hitNo description
Gene3DG3DSA:1.10.10.603.2E-11119174IPR009057Homeodomain-like
PROSITE profilePS5129419.467120176IPR017930Myb domain
SuperFamilySSF466893.88E-17121177IPR009057Homeodomain-like
SMARTSM007171.1E-10124174IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.8E-16125174IPR006447Myb domain, plants
PfamPF002493.4E-12127171IPR001005SANT/Myb domain
CDDcd001671.20E-10128172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDQLSYLPTA PPSPPFPSSS SSSSALFKSP PQLAEDHGDD QWTFEENKRF EDALAEFDDL  60
GAPDLLETIH ARVPGKTLWE IKKHFDDLVE DIEKIETGMI PIPNYKTTPT EVKSNPPRSQ  120
PRRRGLVWSE EEHKLFLQGL EKYGKGDWKS ISRHCVVSRN PTQVASHAQK YFRRLQNSAA  180
YEQDAYGECS TSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-14421181186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13016.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461430.11e-139PREDICTED: transcription factor DIVARICATA-like isoform X2
SwissprotQ8S9H76e-41DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P6RL609e-92A0A2P6RL60_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_008242158.12e-51(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1862266
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.17e-43Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]