PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12682.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 441aa    MW: 48658.4 Da    PI: 10.0325
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12682.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12109159146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                              +++WT eE+e l  +v+++G+g Wk I +          R+  ++k++w++
  mrna12682.1-v1.0-hybrid 109 KQKWTSEEEEALRAGVRKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRN 159
                              79***********************************9***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.081104165IPR017930Myb domain
SuperFamilySSF466892.48E-16106162IPR009057Homeodomain-like
SMARTSM007171.6E-8108163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-15109160IPR009057Homeodomain-like
PfamPF002495.5E-9109159IPR001005SANT/Myb domain
CDDcd116602.74E-22110160No hitNo description
Gene3DG3DSA:1.10.10.105.3E-8242318IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.0E-7243314IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.58E-8245330IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150416.101245319IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEMTKRGLQV FNGAKKSGLS LRASVTGWFL WGVADREEFI RCALICRGVS MVIRKSPRGE  60
VLLGEVRRSG SLVQCSFSDL KKTSRGSRRE LFQIHREKSE AKREMGNPKQ KWTSEEEEAL  120
RAGVRKHGTG KWKDIQKDPE FNPFLSSRSN IDLKDKWRNM SVSGGMGGPR EKAKTTRPRD  180
SPVTLFANPT PQTSAAASVK REPSAALLKR EPSSAPVKRE AASSLVKGEP VADDSPTEAK  240
TEAKTAPLYN ALIFEALETS TDPNGLETGA IANFIEQRLV LEKKNEVPQN FRRLLSSRLR  300
RLVAQEKLEK FQNCFKMKGD SSANTKVPPP PTPPVPNAPK QNETPAAPKQ NETPPAPKQN  360
DVQLTQLQSS ADVIPYETVE EAAVAAAYKI AEAENKSFVA AEAVKESERV SQMFEDTNSV  420
LQLAEEFLKK CLQGEVLLLV *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12682.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285380.0FR828538.1 Rosa rugosa mRNA for putative MYB transcription factor (myb5 gene).
GenBankFR8285470.0FR828547.1 Rosa rugosa mRNA for putative MYB transcription factor (myb14 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287581.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A2P6RKC20.0A0A2P6RKC2_ROSCH; Putative transcription factor MYB-HB-like family
TrEMBLF2QKV80.0F2QKV8_ROSRU; Putative MYB transcription factor
STRINGXP_004287581.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-44MYB_related family protein