PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12442.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 888aa    MW: 97609.1 Da    PI: 4.9193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12442.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.53.9e-51131401128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lp GfrF+Ptdeel+ +yL+ k++g++ e+ +vi+e+d++++ePwdLp  + +++++ ew+fF+++dkky++g r nrat +gyWk
  mrna12442.1-v1.0-hybrid  13 LPLGFRFRPTDEELIEFYLRSKINGRDKEV-SVIREIDVCRWEPWDLPdlSVIQTQDPEWFFFCPQDKKYPNGFRLNRATIAGYWK 97 
                              699************************999.99**************96447888999**************************** PP

                      NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              atgkd++++s + +lvg+kktLvf+kgrapkg++t+Wvmheyr+
  mrna12442.1-v1.0-hybrid  98 ATGKDRRIKS-GANLVGMKKTLVFHKGRAPKGKRTNWVMHEYRA 140
                              **********.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-597163IPR003441NAC domain
PROSITE profilePS5100556.05613163IPR003441NAC domain
PfamPF023654.1E-2614139IPR003441NAC domain
SuperFamilySSF531872.09E-51571684No hitNo description
Gene3DG3DSA:3.40.630.101.1E-64572665No hitNo description
TIGRFAMsTIGR018915.1E-82572866IPR017439Amidohydrolase
PfamPF015461.6E-26575873IPR002933Peptidase M20
Gene3DG3DSA:3.30.70.3601.6E-39668786IPR011650Peptidase M20, dimerisation domain
SuperFamilySSF550312.22E-27668787IPR011650Peptidase M20, dimerisation domain
PfamPF076871.7E-9673767IPR011650Peptidase M20, dimerisation domain
Gene3DG3DSA:3.40.630.101.1E-64787882No hitNo description
SuperFamilySSF531872.09E-51789880No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MVMDMGVVSL SSLPLGFRFR PTDEELIEFY LRSKINGRDK EVSVIREIDV CRWEPWDLPD  60
LSVIQTQDPE WFFFCPQDKK YPNGFRLNRA TIAGYWKATG KDRRIKSGAN LVGMKKTLVF  120
HKGRAPKGKR TNWVMHEYRA TQKELDGTNP GQSPFVLCRL FKKQDESIEI SNCDETEPAV  180
SSPSIVKSPL EDTQSAQTLV PPSPSCQMQP KKLHTGAECI NADNYDGMTS DPLPISECPS  240
NSCNDYDGPD QLDLPLEEYL SRFYDPQEEP PFSPLHSQLE VEHCYPGSNG FNNGHKGVQL  300
PNDSIEQDAE VSEFLSTIFN CSEEYSFEDL DTLSSAIESE TKNVVPFKDY GSCNAADPNL  360
NDVLFMAELQ TPVSLEGNVD RKGPITPMQI ATTPQNYEQS SKVEVSSNHS NSLPSAGTGI  420
RIMTRQTPST STLRPSIMTQ GEAPRRIMYQ SKLQIGSIQC RNVSKNLHYR PEDHERKLIA  480
VEETRDSEKK ASSDAAFHAG NALDEPPETL IVESSDQTIS ATPNITSLGS ILTGKAIPSV  540
YLLACGDFIS FEAAGRPFAV HLAGDPKFLR GELVDWEHKS KIDGKMHGCG HDAHTTMLLG  600
AAKLLSQRKE KLQGTVRLIF QPAEEGGYGA ADMIKEGALG EAEAIFGMHV DFETSTGSIE  660
TIAGPHLAAV SFFEAKIVGE GGHAAGPHDT VDPTLAASFA ILALQQIISR ETDPLQSQVL  720
SVTYVRGGTA SNVIPDYVEF GGTLRSLTTE GLYQLMKRLK EVIEGQAAVH RCTAYVDMKI  780
EEFPPIPAVV NDENLNLHVN RVAKLVLGPE NVKVGKKVMA SEDFAFYQEL IPGIMISIGI  840
RNVEVGSVHS PHSPYFFLDE GVLPVGAALH TALAEMYLNE HQHSAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xmb_A7e-9554188067404IAA-amino acid hydrolase homolog 2
2q43_A7e-9554188067404IAA-amino acid hydrolase ILR1-like 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12442.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470170.10.0PREDICTED: NAC domain-containing protein 86
TrEMBLA0A2P6SPM50.0A0A2P6SPM5_ROSCH; Putative transcription factor NAM family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.22e-91NAC transcription factor-like 9