PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12431.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 201aa MW: 22854.8 Da PI: 6.5876 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.8 | 2.8e-11 | 67 | 144 | 17 | 96 |
E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 lp ++++g++ + l+ + + W+vkl+ + ++++++l+kGWk F + L+eg+ +vF + g+ s f +v++ mrna12431.1-v1.0-hybrid 67 ELPAVAVKKYGHQMGD--HIFLKVpNWEEPWKVKLSKSPCGNHMWLEKGWKAFTQFYLLEEGELLVFNYYGEhSHF--RVRI 144 5777788888877555..5777765688*******77777777*************************99976777..6665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.516 | 51 | 148 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-13 | 65 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-12 | 67 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.7E-9 | 68 | 144 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.90E-14 | 68 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MHHYSKASTN LNLAICAVKR FWQKAVASAI EVEEQGHMKS VHDRESAYRV EKNTELVSSR 60 KDKSLEELPA VAVKKYGHQM GDHIFLKVPN WEEPWKVKLS KSPCGNHMWL EKGWKAFTQF 120 YLLEEGELLV FNYYGEHSHF RVRIIGWDDM EIHYPSPGNE VRAVIISSGS SGDEQELEAR 180 LIAISSGSSG DEHEIEARAK * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12431.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011470668.1 | 6e-90 | PREDICTED: B3 domain-containing protein At1g49475-like | ||||
TrEMBL | A0A2P6SMG5 | 3e-67 | A0A2P6SMG5_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004309106.1 | 3e-84 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 5e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna12431.1-v1.0-hybrid |