PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12308.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 302aa MW: 32898.2 Da PI: 10.5818 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 8.3e-31 | 224 | 282 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+++dp+++++tYe eH+h+ mrna12308.1-v1.0-hybrid 224 SDEFSWRKYGQKPIKGSPYPRGYYKCSSVrGCPARKHVERAQDDPTMLIVTYEAEHRHP 282 69*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.7E-17 | 179 | 221 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 5.0E-33 | 211 | 284 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.468 | 218 | 284 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-26 | 221 | 284 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-36 | 223 | 283 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-26 | 225 | 282 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MAIDLVRFSK IDDRTAMEEA ASAGLQSMEH LIRVLSSQTP SQNNLDCREI TDFTVSKFKQ 60 FISVLNRTGH ARFRRGPAKQ PSEPTTTYSA PPPPPNPVPP KSQTTLSFES RNPKANTKTN 120 SNSKDCLTLS PPMSTTSSFL SSVTTGDGSI SNGKVFSSAA VAPAPAFSAG KPPLSQSHRK 180 RCHDELATKT TSSGRCHCSK RRKTKVKRTV RVPAISSKIA DIPSDEFSWR KYGQKPIKGS 240 PYPRGYYKCS SVRGCPARKH VERAQDDPTM LIVTYEAEHR HPHPQSNSVP AGVVGLVFQS 300 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 211 | 284 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12308.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299798.1 | 0.0 | PREDICTED: probable WRKY transcription factor 11 | ||||
Swissprot | Q9SV15 | 1e-114 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A2P6QSF4 | 1e-179 | A0A2P6QSF4_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004299798.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 6e-91 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | mrna12308.1-v1.0-hybrid |