PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12191.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 340aa    MW: 38024.9 Da    PI: 4.4521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12191.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.9e-112512911055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              rrRR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  mrna12191.1-v1.0-hybrid 251 RRRRERINERLKVLQNLVPNG-----RKVDISTMLEEAVNYVKFLQ 291
                              9******************96.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-15240307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.529241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-14244300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-8251291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.93E-4257295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDRTGAVPEG EWSSHSLGGM FTGDQQEADF MMIQLLENYP NIPDMAIPDD FWPGNEESTL  60
MNISSNYGSP DYSLESTYSL LNDSSQETDL FSTSTDRFYN LSGSRPMTSV TRNVNGNDNS  120
ISNDFCAEEA IDVTSLYLIQ EEGDVSIDGN VEEPSRYQRD EPASIDHEKS NTSSSKISSM  180
KRPKASENDQ MNKRSRKSKK SCNNEEDGNH IDNASQLQPS GGITEAASLN LNGKTRATRG  240
SATDAQSVYA RRRRERINER LKVLQNLVPN GRKVDISTML EEAVNYVKFL QLQIKMLSSD  300
DMWMYAPICY NGMFFGLDGD ESSHARSMLE LKDNIQKRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12191.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301388.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A2P6PLD57e-84A0A2P6PLD5_ROSCH; Putative transcription factor bHLH family
STRINGXP_004301388.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-41bHLH family protein