PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12179.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 555aa    MW: 59071 Da    PI: 7.2109
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12179.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.5e-10223267144
                              TSSS-HHHHHHHHHHHHHTTTT-HHHH..HHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktI..artmgkgRtlkqcksrw 44 
                              r++W++eEd+ l+ av+ +G g+W+ I  a+  g  Rt++q+  rw
  mrna12179.1-v1.0-hybrid 223 RKKWSEEEDLELISAVNIYGEGNWTQIvkANFKG-DRTANQLSQRW 267
                              789************************4444455.*******9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-14218274IPR009057Homeodomain-like
PROSITE profilePS5129417.783218275IPR017930Myb domain
SuperFamilySSF466892.07E-12219273IPR009057Homeodomain-like
SMARTSM007171.1E-10222273IPR001005SANT/Myb domain
PfamPF002496.0E-9223267IPR001005SANT/Myb domain
CDDcd116608.08E-13224267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MMIDDNNNAK DGKKGFITEE DTATLLQRYS AATILALLQE VAHLMQSEKI NYDELVAKTT  60
TGITNAREYQ MLWRHLAYRE PLPDKFDDGE ALMDVDSDYE YDVEVAPPVT ADASTEAAAC  120
VKIRGAYIVD GCFGQVLMAS GLPSDSSHLN GTTVEAPLTI NIPNGQSSKA HEPSISARGV  180
NITVPVSIQK QTFPATTTTA VAKVEGDDAN KAASNTMAPR RKRKKWSEEE DLELISAVNI  240
YGEGNWTQIV KANFKGDRTA NQLSQRWGIV KKRQRKSGPG EGDKGTQSVK KEALLAAHQA  300
ITHFLDSGSN RTLITVGTGG TNVNINTAET NANNESGVTN GIHNSGLQTT TAEGLNAKKT  360
NRMGSFGPTP KGRITSKKTL PKSNMNLDPL SATAVAAGAR IVSQSDAELL KAAAQAKNAI  420
HIMPQTGGSI KSSTVHHIRT NPAATLPSTH PTTRHPGSVK AVPQTSQQAL NIDTSRNITG  480
VNSSPAAEVL PKPVQIGEHL SGSEQIQEGK VESPKQTAVS ESLLTDAQNP AASLDTKKDE  540
SNDKAITGDE RKVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220224RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12179.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464686.10.0PREDICTED: uncharacterized protein LOC101299478 isoform X2
TrEMBLA0A2P6PGR50.0A0A2P6PGR5_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004299744.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.17e-69MYB_related family protein