PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12168.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 352aa    MW: 39787.2 Da    PI: 4.8907
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12168.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.82.6e-2031312127
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiy.kvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 
                              p GfrFhPtd+el+ +yL  k ++++ le+ + ++e+d+y ++e w++ +++ +   ++++++fF++ +k   +g+r nr + sg+
  mrna12168.1-v1.0-hybrid   3 PTGFRFHPTDQELIGHYLFIKNNSDPvLETGSYLREFDMYgEIESWTIWEAYGGpllDDQDLFFFTRLKK---HGHRINRRIGSGT 85 
                              79*******************999995555556****999468*****7433335557889999998866...589********** PP

                      NAM  83 Wkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                              W++    k+v++k  +++ +g k+ L +  +++ + ++  W+m+ey+
  mrna12168.1-v1.0-hybrid  86 WSQGEPFKSVYAKnnQETPIGKKTKLRYE-NKNVTEQSGCWFMDEYS 131
                              **99999****985455559999999997.677777999*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.72147IPR003441NAC domain
SuperFamilySSF1019412.75E-213145IPR003441NAC domain
PfamPF023651.3E-153131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDPTGFRFHP TDQELIGHYL FIKNNSDPVL ETGSYLREFD MYGEIESWTI WEAYGGPLLD  60
DQDLFFFTRL KKHGHRINRR IGSGTWSQGE PFKSVYAKNN QETPIGKKTK LRYENKNVTE  120
QSGCWFMDEY STVDYDGDYV ICRLRENPDK RPSPPPLSKP SDKKRKCQAD PKPSKKTKSL  180
RVSDPQPATI TNEARKTVSL NQRPNPEKRF DQSLRLPDSH VMLLEGTTAA GHIDCAFDTV  240
EMFHHDQEYE TQHFLLEGNT AGHSDYALVE VQRDAFSPAA VSEQQHTCAS SFALPNLTDD  300
VFVSENESGN QQLEDTDCLG VALGVVEGDT LFPALSEQQT SSLMSQMQDI C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12168.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465735.10.0PREDICTED: NAC transcription factor ONAC010-like
TrEMBLA0A2P6PGY94e-79A0A2P6PGY9_ROSCH; Putative transcription factor NAM family
STRINGXP_004309935.11e-144(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2193324
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.15e-15NAC-domain protein 101