PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12069.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ZF-HD | ||||||||
Protein Properties | Length: 255aa MW: 27283.3 Da PI: 7.6649 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103 | 1.9e-32 | 52 | 106 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eClkNhA+++Ggha+DGCgEf+++ geeg+ +alkCaAC+CHRnFHR+e++ mrna12069.1-v1.0-hybrid 52 TIRYRECLKNHAVNIGGHALDGCGEFLAA-GEEGSLDALKCAACNCHRNFHRKEPA 106 689*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-23 | 20 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.8E-29 | 53 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.9E-29 | 54 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.418 | 55 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.01E-20 | 178 | 252 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-31 | 190 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.2E-27 | 191 | 247 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEFNDHHEDQ DEDMELSPTA PTPPGYDSSR SKMGPTSGGG GGDGAARKRV PTIRYRECLK 60 NHAVNIGGHA LDGCGEFLAA GEEGSLDALK CAACNCHRNF HRKEPAEGGG GGATIAHQQH 120 SQQQPFSAYY GHPYPPPPPS GYLHLTPAQP QRPLALPAAA GSGGSHSREE LDDVSNPSSS 180 GGGGSGVGLL RKRFRTKFTA EQKEKMVEFA EKVGWRIQKH DEAAVEEFCA VTGVKRQVLK 240 VWMHNNKHTI GKKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-29 | 192 | 249 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12069.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299701.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q9SB61 | 3e-78 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A059BKP6 | 6e-98 | A0A059BKP6_EUCGR; Uncharacterized protein | ||||
STRING | XP_004299701.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-68 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | mrna12069.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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