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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | mrna11645.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 223aa MW: 26316.8 Da PI: 8.6404 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 42 | 3.1e-13 | 159 | 216 | 1 | 60 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrt 60
+fYn+YA++ GFs+r++ k ++ t+rtfvC keg+r+e+k++ + ++++ra+tr+
mrna11645.1-v1.0-hybrid 159 NFYNAYARSEGFSIRRDGYGKD-KKSVLTSRTFVCCKEGFRKEDKRD-DLTKNPRAQTRM 216
6****************98888.5556*****************999.888888888875 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 6.6E-10 | 159 | 214 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 223 aa Download sequence Send to blast |
MEGDEDDVEW IWSWLALDVE ETEVVKEWGH GAANLKRGIW QSKEKGKEIW MWFSILREMR 60 KESGSSPHER LLLFSHESIS AFYFHVLHVL WLRQRRPPRP LSLHDVLHHI PSFQLFTTGF 120 EVLRVEKSVG ENNNSLEKSK KDLKPKYYME FDSKIAAFNF YNAYARSEGF SIRRDGYGKD 180 KKSVLTSRTF VCCKEGFRKE DKRDDLTKNP RAQTRMWSDY GD* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna11645.1-v1.0-hybrid |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G59470.2 | 2e-09 | FAR1 family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | mrna11645.1-v1.0-hybrid |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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