PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna11416.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HRT-like

Protein Properties

Length: 480aa MW: 53675.5 Da PI: 9.7664

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna11416.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	57.2	2.7e-18	298	328	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+ +dG+ C++ Pv+gRKRC+eHKGmRi mrna11416.1-v1.0-hybrid 298 VCGVAVGDGTLCRKAPVQGRKRCAEHKGMRI 328 7*****************************7 PP
2	HRT-like	60	3.7e-19	363	393	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ +dGs+C+++Pv+gRKRC+eHKGmRi mrna11416.1-v1.0-hybrid 363 ICGVAVGDGSICRTPPVHGRKRCAEHKGMRI 393 8*****************************7 PP
3	HRT-like	24.1	6.2e-08	442	462	1	21
HRT-like 1 iCGviledGsvCkrqPvkgRK 21 iCG+il dGs+C+++P++ +K mrna11416.1-v1.0-hybrid 442 ICGFILADGSPCRTEPIQRKK 462 8*****************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MVASDFTALL PRLKREECKR TKHDSHFSNW KVLVGPSDWE DYWLGKEGAE RYRVYNLPRD 60 ESPGVYELGV AVSRSGLGRG VEADRIVPVY LGQADSVRTR LQQYGRTGAH LGKCCSSERI 120 RKGPGLFEEM LGRGYPIVYR WAPHGCICIF ILILIRMRAR MLEIHPGECC ACHYEISQFM 180 ETKSNALKTE SQLLNTFDYA WNTSINGARR PDDVLQRLKK ISSKPTRFTN IVQRLLPFSQ 240 KQVGIRINSS KLVSKEEKFS GYADRENLNL IAQVFKFGRS QPRLVVDRSG ISQENTIVCG 300 VAVGDGTLCR KAPVQGRKRC AEHKGMRITV KISNSNIGSK CSVISNREFV SDESGITQEN 360 TIICGVAVGD GSICRTPPVH GRKRCAEHKG MRIKESITVR VSEKYVDSKF SNKELDSHDA 420 SNVKYEQVKL PPVHVCESST SICGFILADG SPCRTEPIQR KKGVISTKGE GSRNPTQRQ*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MVASDFTALL PRLKREECKR TKHDSHFSNW KVLVGPSDWE DYWLGKEGAE RYRVYNLPRD  60
ESPGVYELGV AVSRSGLGRG VEADRIVPVY LGQADSVRTR LQQYGRTGAH LGKCCSSERI  120
RKGPGLFEEM LGRGYPIVYR WAPHGCICIF ILILIRMRAR MLEIHPGECC ACHYEISQFM  180
ETKSNALKTE SQLLNTFDYA WNTSINGARR PDDVLQRLKK ISSKPTRFTN IVQRLLPFSQ  240
KQVGIRINSS KLVSKEEKFS GYADRENLNL IAQVFKFGRS QPRLVVDRSG ISQENTIVCG  300
VAVGDGTLCR KAPVQGRKRC AEHKGMRITV KISNSNIGSK CSVISNREFV SDESGITQEN  360
TIICGVAVGD GSICRTPPVH GRKRCAEHKG MRIKESITVR VSEKYVDSKF SNKELDSHDA  420
SNVKYEQVKL PPVHVCESST SICGFILADG SPCRTEPIQR KKGVISTKGE GSRNPTQRQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna11416.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024181854.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like isoform X2
TrEMBL	A0A2P6RK91	0.0	A0A2P6RK91_ROSCH; Putative transcription factor HRT family
STRING	XP_004288924.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-84	effector of transcription2

Link Out ? help Back to Top
Phytozome	mrna11416.1-v1.0-hybrid