PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11137.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 503aa    MW: 55055.9 Da    PI: 5.3079
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11137.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3367e-1031144931374
                     GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn...sseela 79 
                              lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +  + + +k l  + +++++    ++++a
  mrna11137.1-v1.0-hybrid 114 LVHLLMAAAEALTGANKSrdLARVILVRLKELVSPTDgTNMERLAAYFTEALQGLLEGaGGVSHSKHLIGNGSHRDHghhPTDVIA 199
                              68**********997776669***********9987769*****************99533444444433333333345699**** PP

                     GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleet 161
                              a++l++++sP++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++  sg  s  +++et
  mrna11137.1-v1.0-hybrid 200 AFQLLQDMSPYVKFGHFTANQAILEAVVHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRGGSGrrSIGTVQET 285
                              *********************************************************776556*********888898999***** PP

                     GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                              g+rL+ fA+++g pf+f+    ++ e++++++L++ +gEal++n++l+l ++  +s ++     ++L+  k+l+P++v +ve+e+ 
  mrna11137.1-v1.0-hybrid 286 GRRLTAFATSIGQPFSFHQCRLDSDETFRPSALKLVKGEALVINCMLNLPHFSYRSPDSIA---SFLSGAKTLNPRLVALVEEEVR 368
                              *******************9999*****************************966665555...9********************9 PP

                     GRAS 248 h.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                +++ F++rf+++l++ysa++dslea++p +s++r+ vEr++lg++i   +a   ++     e   +W e+l++ GFkp p+s  
  mrna11137.1-v1.0-hybrid 369 PaGDGGFVARFMDSLYHYSAVYDSLEAGFPMQSRARALVERVFLGPRIAGSLARIYRA---HGEVGCSWWEWLSAEGFKPTPISFA 451
                              99******************************************************99...677788******************* PP

                     GRAS 333 aakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                              + +qaklll  ++ dgyrvee   + lvlgWk+r+L+s+S W+
  mrna11137.1-v1.0-hybrid 452 NHCQAKLLLGLFN-DGYRVEEVaYHRLVLGWKSRSLLSASIWT 493
                              *************.******86378899**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.29988473IPR005202Transcription factor GRAS
PfamPF035142.4E-100114493IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MELELDDLDV DLSGCSTETT STTNTAISPD QWYDWSPVVD WEALAPIDHL AGGGDFHELF  60
ESMMEGGERD SLSSELVEET SNSCYTTTSS QSTEVTMLDE GAASNSEDTK GLRLVHLLMA  120
AAEALTGANK SRDLARVILV RLKELVSPTD GTNMERLAAY FTEALQGLLE GAGGVSHSKH  180
LIGNGSHRDH GHHPTDVIAA FQLLQDMSPY VKFGHFTANQ AILEAVVHDR RVHIVDYDIM  240
EGIQWASLMQ ALVSRKDGPP TPHLRITALS RGGSGRRSIG TVQETGRRLT AFATSIGQPF  300
SFHQCRLDSD ETFRPSALKL VKGEALVINC MLNLPHFSYR SPDSIASFLS GAKTLNPRLV  360
ALVEEEVRPA GDGGFVARFM DSLYHYSAVY DSLEAGFPMQ SRARALVERV FLGPRIAGSL  420
ARIYRAHGEV GCSWWEWLSA EGFKPTPISF ANHCQAKLLL GLFNDGYRVE EVAYHRLVLG  480
WKSRSLLSAS IWTSPPESDV AN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-5410549310379Protein SCARECROW
5b3h_A8e-541054939378Protein SCARECROW
5b3h_D8e-541054939378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11137.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024166526.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2P6PX630.0A0A2P6PX63_ROSCH; Putative transcription factor GRAS family
STRINGXP_004292683.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-162GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]