PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11016.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 385aa    MW: 44040.1 Da    PI: 6.7052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11016.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005279101323
                              ET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                              C+   Cgk+F +   L++H   H
  mrna11016.1-v1.0-hybrid  79 CSyeGCGKTFIDAGALRKHSHIH 101
                              77779**************7766 PP
2zf-C2H216.42.5e-05106130123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              y+C+   Cgk F ++s LkrH   H
  mrna11016.1-v1.0-hybrid 106 YVCHyeGCGKKFLDSSKLKRHFLIH 130
                              9********************8877 PP
3zf-C2H221.65.5e-07136160123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              ++Cp   Cgk Fs   nL++H++tH
  mrna11016.1-v1.0-hybrid 136 FVCPheGCGKAFSLDFNLRSHMKTH 160
                              89**********************9 PP
4zf-C2H217.51.2e-05166190123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              + Cp  dCgk++ + + Lk+Hi++H
  mrna11016.1-v1.0-hybrid 166 HICPypDCGKRYAHEYKLKNHISSH 190
                              679999******************6 PP
5zf-C2H213.80.00017244269123
                              EEET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                              y Cp   C k + + + Lk H+r+ H
  mrna11016.1-v1.0-hybrid 244 YACPyeGCEKAYIHEYKLKLHLRReH 269
                              89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.6E-1472103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003277101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576674.18E-880130No hitNo description
Gene3DG3DSA:3.30.160.602.4E-14104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921106135IPR007087Zinc finger, C2H2
SMARTSM003550.0024106130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-14117170No hitNo description
Gene3DG3DSA:3.30.160.603.8E-20127162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1E-4136160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.695136165IPR007087Zinc finger, C2H2
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-8163190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.162166195IPR007087Zinc finger, C2H2
SMARTSM003550.0045166190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
SuperFamilySSF576672.14E-5239267No hitNo description
Gene3DG3DSA:3.30.160.603.8E-9239267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.972244274IPR007087Zinc finger, C2H2
SMARTSM003550.0089244269IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDTQFHHNYF ERRTIFRSRA PAVRWVKEWV SQDVVATGGK CSLLKWVTEG TVKVLNEKSK  60
ELLAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PDCGKRYAHE  180
YKLKNHISSH HEKVAISSAP LPFAYIDNVP VDVPKYAVPP SEKQTKTPKT PAGVYGSASS  240
DRPYACPYEG CEKAYIHEYK LKLHLRREHP GHMSDENAEH APNTVDNEMD ETSDQDVYAV  300
KRANGKSQKT NRAKPNLKFP PAKVRKGSTP YQATTNTMKK PWPVKEVVYE EDSEETEEDR  360
DNVEDGWRYV GNNDDDDEET EYED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-35701902119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11016.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299900.10.0PREDICTED: uncharacterized zinc finger protein At4g06634 isoform X1
SwissprotQ2V3L31e-153YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2P6PCW10.0A0A2P6PCW1_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004299900.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-150C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]