PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10904.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 292aa    MW: 33283.2 Da    PI: 4.6272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10904.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM661.1e-2031401128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrkn 75 
                              l pG rF P d+el+  yLk+ v+g+ ++ ++  + + d+y+  ePw++ +     +       ++k++yfF++++k    g+r++
  mrna10904.1-v1.0-hybrid   3 LLPGQRFCPMDDELLFPYLKPMVNGQMVPGKDSlFCDSDLYRNlEPWQIWQefesrH--VndlrKNKDMYFFIQNKK---LGSRTS 83 
                              579************************99888769999999644*****75345542..0345466799****9877...489*** PP

                      NAM  76 ratksgyWkatgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128
                              r++ +g Wk +g  kev+  ++++       glkkt ++ +  +++ ++ +Wvm e++l
  mrna10904.1-v1.0-hybrid  84 RKVGTGSWKGQGAGKEVYLLDDNAqpptilLGLKKTYTYVN--RNSVHHGHWVMYEFQL 140
                              *****************9984444467777*********94..445569********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-212149IPR003441NAC domain
PROSITE profilePS5100524.4223160IPR003441NAC domain
PfamPF023651.1E-145140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGLLPGQRFC PMDDELLFPY LKPMVNGQMV PGKDSLFCDS DLYRNLEPWQ IWQEFESRHV  60
NDLRKNKDMY FFIQNKKLGS RTSRKVGTGS WKGQGAGKEV YLLDDNAQPP TILLGLKKTY  120
TYVNRNSVHH GHWVMYEFQL HSSQITQLTN DCVPCMLRNN DELSKRKRHQ EEEGLEEPSV  180
EASAGDSHLS SDAFVVEEEP QEKRQRLQAP GVTAPFFNGA DLEQWYLNQQ VMQPIPPLIE  240
AEQEAGPTPL EDEPAVALQG SENLAVQQPA TELQQREPSQ ITTEPQQREE N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10904.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465762.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A2P6QGR31e-104A0A2P6QGR3_ROSCH; Putative transcription factor NAM family
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.24e-14NAC domain containing protein 38