PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10688.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 238aa    MW: 25949.7 Da    PI: 6.2238
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10688.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126284123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C + F++   L  H+++H
  mrna10688.1-v1.0-hybrid 62 YTCTFCRREFRSAQALGGHMNVH 84
                             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-65989No hitNo description
SMARTSM003550.00666284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1576289IPR007087Zinc finger, C2H2
PfamPF139121.8E-56285IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAELGLLSLT QLQAQNSQSN PRSVWMWNPK QAHDQEDDSW EVRAFAEDTG NVMGTTWPPR  60
SYTCTFCRRE FRSAQALGGH MNVHRRDRAR LHQVQHPSSI SINPSAVSSS NSSFVIPTQE  120
FLAANGGLCL LYQLPHPNNG AFTNSNATAP ITPFLNNTTV ESSSSSVPST LLSISPNPLH  180
DYLMTSSSSL VGPHGVSNSI KNSHCQYAKR SAEEDQPLKS GVEDSEELDL ELRLGPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135784229superman protein
2l1o_A2e-135784229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10688.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301687.11e-176PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A2P6P9Z41e-139A0A2P6P9Z4_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004301687.11e-176(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-35C2H2 family protein