PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna10181.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 295aa MW: 32521 Da PI: 6.3431

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna10181.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.7e-15	14	66	1	48
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g t ++Ia++++ Rt++++k++w+++l mrna10181.1-v1.0-hybrid 14 KGPWTPEEDIVLVSYIQEHGPGnwravpTNTAIASYLP-QRTDNDIKNYWNTHL 66 79******************5555555567888888.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.0E-23	5	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.8E-16	8	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.226	9	70	IPR017930	Myb domain
SMART	SM00717	2.6E-12	13	68	IPR001005	SANT/Myb domain
Pfam	PF00249	6.0E-14	14	66	IPR001005	SANT/Myb domain
CDD	cd00167	8.01E-14	16	66	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MGRPPCCEKV GIKKGPWTPE EDIVLVSYIQ EHGPGNWRAV PTNTAIASYL PQRTDNDIKN 60 YWNTHLKKKL KKIQSAVDHH HQQYPQAHNN ILGSSISDST TCNSNPLQYP TRNNVNDITS 120 HASTTTLSLR SINQSSSSGG IYASSTENIS RLLEGWMRTS PKSTNANLVS KPSLDQEESP 180 KGGQDKDEGC DHDLLSHEAY ESMVSFDNLN NVNAASWDRS STNNCNSSSI KQVSETQSST 240 TPVIPNEKNK HIIRACDITS TPPLSFLEKW LLDESAAGQV LEDRMMELSP ITLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna10181.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467891.1	0.0	PREDICTED: myb-related protein 306
Swissprot	B3VTV7	4e-65	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A2P6RHA2	1e-163	A0A2P6RHA2_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_008240570.1	3e-84	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22263	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	3e-51	myb domain protein 60

Link Out ? help Back to Top
Phytozome	mrna10181.1-v1.0-hybrid

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]