PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09916.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 570aa    MW: 63160 Da    PI: 4.9175
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09916.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.6e-14421211399
                              TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                              s+ + lp k a+   +   ++++  led++ ++W+v +  +   g+  +++GW+ F+ +++L++gDf+vF ++  s f  +vk+++
  mrna09916.1-v1.0-hybrid  42 SKFMELPPKVARIVLL---SDRKTFLEDLTRQRWNVAI--STVNGSLAFQQGWNAFALDHDLQVGDFLVFNYVVGSHF--TVKIYD 120
                              2334555555522222...456789999999*******..77777799***********************9976888..999988 PP

                              S CS
                       B3  99 k 99 
                              +
  mrna09916.1-v1.0-hybrid 121 N 121
                              6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-1830124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1731124IPR015300DNA-binding pseudobarrel domain
CDDcd100176.44E-1731120No hitNo description
PfamPF023622.4E-1132121IPR003340B3 DNA binding domain
SMARTSM010195.1E-832122IPR003340B3 DNA binding domain
PROSITE profilePS5086311.01164122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MAHEFEACAE CTHRCQLAHG KKKSGSHIAN SFFKIMIGKQ FSKFMELPPK VARIVLLSDR  60
KTFLEDLTRQ RWNVAISTVN GSLAFQQGWN AFALDHDLQV GDFLVFNYVV GSHFTVKIYD  120
NSGCELNLFE TIHQHNINRD QCHTFVKSTA SKSGLVTFAG PDAEISKCLN ELNGMNKPLI  180
ITEYASTHDD DNERSKGKRK AEFAEDMSCM MKRDYGNQPE ENRAHILDLS SVESFKKIRT  240
CGSDGTKVSV VNETHSYCAD LSLKLRSEAD SVKIPVAKEV PNRVIPLDAA ELERTEKNNY  300
SESKVKGASL SDKDSSTNVT SGHLFPTLPD NNQQNDIFSG NDHQVAVSGQ ENDLMDDTCQ  360
SANKNITISG ISKSCGIPIT SASQNDTAME VIEIEPLELT SHPCSKEVIP ESNDDAMIIT  420
EKEFKEFSSD PCSQEVIPER KDETTRAIEN VIVDLTSDEC RKQVIEKEES PDVSAKVDNQ  480
SSNSQRRDIP SDQAEFERTE EHNKSEAKVN KVPSDKDSCT ETSGHPFPTH SQTPEENGET  540
ITDTSKPTSD NSKKPTKECQ NADGSGKLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09916.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464207.10.0PREDICTED: uncharacterized protein LOC101297645 isoform X1
RefseqXP_011464208.10.0PREDICTED: uncharacterized protein LOC101297645 isoform X1
TrEMBLA0A2P6P5870.0A0A2P6P587_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004301039.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-10B3 family protein