PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna09904.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 510aa MW: 56171.8 Da PI: 4.9419 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.2 | 1.2e-12 | 168 | 190 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tG Ck+G++CkF+H+ mrna09904.1-v1.0-hybrid 168 EDCSFYLKTGSCKFGSNCKFNHP 190 78********************9 PP | |||||||
2 | zf-CCCH | 25.7 | 2e-08 | 218 | 242 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r G CkyG+ C+++Hg+ mrna09904.1-v1.0-hybrid 218 QTECKYYLRPGGCKYGNGCRYIHGK 242 568********************96 PP | |||||||
3 | zf-CCCH | 40.4 | 4.9e-13 | 263 | 287 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG CkyG++Ck++H+ mrna09904.1-v1.0-hybrid 263 GERECPYYMRTGSCKYGSNCKYNHP 287 789*********************9 PP | |||||||
4 | zf-CCCH | 29 | 1.8e-09 | 395 | 421 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC+ff+rtG Ck+ ++Ck++H++ mrna09904.1-v1.0-hybrid 395 PGQPLCSFFLRTGDCKFKSNCKYHHPK 421 589**********************96 PP | |||||||
5 | zf-CCCH | 34.6 | 3.3e-11 | 442 | 466 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C +++r+G+Ck+G+ CkF H+ mrna09904.1-v1.0-hybrid 442 GQNICTHYSRYGICKFGPACKFDHP 466 6789********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.7E-6 | 162 | 192 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.568 | 164 | 192 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-6 | 164 | 191 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-10 | 168 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-5 | 170 | 189 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.68 | 215 | 243 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0032 | 215 | 242 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-6 | 218 | 244 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-6 | 219 | 242 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 221 | 242 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.957 | 261 | 289 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-6 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.3E-11 | 263 | 287 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 264 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 267 | 286 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.112 | 394 | 422 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-5 | 394 | 421 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-7 | 396 | 421 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 397 | 423 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-4 | 399 | 421 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 438 | 466 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.915 | 440 | 468 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 440 | 467 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-8 | 442 | 466 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MNLSESSSSV VSISSNLDSD TVNNNEIDQV LLSDSDIGSQ HSTAAEREED RHCSCGDGDV 60 PAVVRSGPDP DAVDLDHAVS DEIQKLDLKG EVAVEEVVEE EKKEVVEEEK KEEVEAEKSC 120 NGGEIEDKSS ERQSEEESNE GGENGVEVEK KGGEYNRWYQ YPVRLEAEDC SFYLKTGSCK 180 FGSNCKFNHP VRRKSNNQSQ VFKDKVKEGN ELSEKPSQTE CKYYLRPGGC KYGNGCRYIH 240 GKGKTPVAPV EELNFLGLPI RQGERECPYY MRTGSCKYGS NCKYNHPDPT AAGGSDPPSG 300 FGNSGPASLQ GGSQSSSWSA PRSLNETPPY VPMMMPPSQG VPSRNTEWNG YQAPVYLERS 360 MPAPPPYVIN NSGIETNMYK QYPQSNQVDE FPERPGQPLC SFFLRTGDCK FKSNCKYHHP 420 KSQTAVSPSF ALSDKGLPLR PGQNICTHYS RYGICKFGPA CKFDHPLHLT SSTTSGLDHQ 480 LPFSDLANTN EAARSRSRTD DTIQLQQAV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna09904.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299182.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1 | ||||
Swissprot | Q9STM4 | 1e-125 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A314UUB5 | 0.0 | A0A314UUB5_PRUYE; Zinc finger CCCH domain-containing protein 43 isoform X1 | ||||
STRING | XP_004299182.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4156 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 1e-117 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna09904.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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