PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna09561.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 410aa MW: 46780.7 Da PI: 6.0349

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna09561.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.4	1.7e-36	80	180	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 aCaaCk++rrkC+++C+lapyfpa+qpk f+n+hklFG+ n+lk+lk++++ + ++m+s++ +A++r + PvyG+ +vi++lq q mrna09561.1-v1.0-hybrid 80 ACAACKYQRRKCTPECPLAPYFPADQPKMFQNAHKLFGVCNILKILKTVDPCFKFETMKSIICQANIREKFPVYGCWEVIWQLQYQ 165 7*********************************************************************************** PP DUF260 87 leqlkaelallkeel 101 ++ +++el+ ++++l mrna09561.1-v1.0-hybrid 166 IMAAEQELQNVHKQL 180 ********99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.008	79	180	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-35	80	177	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009556	Biological Process	microsporogenesis
GO:0009786	Biological Process	regulation of asymmetric cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MLLLIPTFFF TLTIFLTSFF FLILLLHHYR HLCIHLSNSF PLSFNRLHLP HWSEPPPQPS 60 RRDLLGNQDI MTLKGATSQA CAACKYQRRK CTPECPLAPY FPADQPKMFQ NAHKLFGVCN 120 ILKILKTVDP CFKFETMKSI ICQANIREKF PVYGCWEVIW QLQYQIMAAE QELQNVHKQL 180 ALYRQHHYHQ QQQISAMPDY VTSQLELGMA PPNNNNTISF LNHSTPQSYD NNNNAIHHAL 240 PVTQQQQQHY SNRSDDAYTS AYDIDSKQTI TTDNVLWAQN PFTNNSINEN NDNAETVQSQ 300 FGVSQTLAMG SEDVQDYDEL HPFFDTIDDR QSYIDSKEAY DSSSSEESLK DTTQISMDHA 360 ADDNTLKSAA ACFSLTSVKL SVQNSEPLLQ FPSSKVYKCL VLIEAKGLD*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MLLLIPTFFF TLTIFLTSFF FLILLLHHYR HLCIHLSNSF PLSFNRLHLP HWSEPPPQPS  60
RRDLLGNQDI MTLKGATSQA CAACKYQRRK CTPECPLAPY FPADQPKMFQ NAHKLFGVCN  120
ILKILKTVDP CFKFETMKSI ICQANIREKF PVYGCWEVIW QLQYQIMAAE QELQNVHKQL  180
ALYRQHHYHQ QQQISAMPDY VTSQLELGMA PPNNNNTISF LNHSTPQSYD NNNNAIHHAL  240
PVTQQQQQHY SNRSDDAYTS AYDIDSKQTI TTDNVLWAQN PFTNNSINEN NDNAETVQSQ  300
FGVSQTLAMG SEDVQDYDEL HPFFDTIDDR QSYIDSKEAY DSSSSEESLK DTTQISMDHA  360
ADDNTLKSAA ACFSLTSVKL SVQNSEPLLQ FPSSKVYKCL VLIEAKGLD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-24	81	183	12	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-24	81	183	12	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna09561.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011464557.1	0.0	PREDICTED: LOB domain-containing protein 27-like
Swissprot	Q9STS6	6e-54	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A2P6P2D1	0.0	A0A2P6P2D1_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004301305.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4415	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-54	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	mrna09561.1-v1.0-hybrid

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]