PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09296.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 631aa    MW: 69192 Da    PI: 5.8326
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09296.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-17237281147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
  mrna09296.1-v1.0-hybrid 237 REKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 281
                              789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-16231287IPR009057Homeodomain-like
PROSITE profilePS5129421.573232286IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-9234284IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-16235284IPR006447Myb domain, plants
SMARTSM007172.8E-13236284IPR001005SANT/Myb domain
PfamPF002491.4E-14237280IPR001005SANT/Myb domain
CDDcd001674.11E-11239282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MVRDDRLHQL HPESVDGVSL AADFVPERRS VDSPSFQINL RLHLSNLELA DSERNEDEDQ  60
QGLRSLLHLR PSSSLKDANL IIRLSPTSIS DLKSIYSGGG SVEREFRYGG EGSAGCCGEG  120
DFDEDGITNL CFCTFPESDS VWEKLSCLSL PATTQPSQDT AKSFICFQFV TLLREREMAF  180
LEDQSEATGS NASLAVGNCS PKGDAQSKLV TELQDFSSFG NDQALKVRKP YTITKQREKW  240
TEEEHQKFLE ALKLYGRGWR QIEEHVGTKT AVQIRSHAQK FFSKVAKELP GTGEGSLKPI  300
EIPPPRPKRK PMHPYPRKHN GSPERRSPSP NFSVAEKGQE SPTSVLSVPG SDIIGSPALE  360
QYNRSRPSTS CTTDMRSANL SHVEKENDYA TSSPSTEEAK ETMPHVDSTL DKPLSVVQKD  420
ASASGCTSTT EGDAGRVGAS MSIKLFGRTV LVSDLHKQSS SGTKDCTSSI YMAKQENHES  480
ESGKCGEPLQ WDRSDTRLSL GGLDCNWNSL ACGLTINRVG QQDGSPKSVP ANSDAPPPLP  540
WWVSLPFCQV VCVDSRVDEL SKQNERSCAG SNDGLVTSID SVCEEPRSVE PCNSRKGFVP  600
YKRCLADTNR NSSVIVSEEK RDRQRARVCS *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09296.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464451.10.0PREDICTED: protein REVEILLE 7-like isoform X1
TrEMBLA0A2P6P1K80.0A0A2P6P1K8_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004299482.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.22e-59MYB_related family protein