PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08032.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | G2-like | ||||||||
Protein Properties | Length: 233aa MW: 26823 Da PI: 7.9256 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 25.2 | 3.6e-08 | 103 | 154 | 5 | 50 |
G2-like 5 rWtpeLHerFveaveqLGGse..kAtPktilelmkv....kgLtlehvkSHL 50 Wt e H+r v+ v qLGG + k+t ++l+lm+ +gLt + + HL mrna08032.1-v1.0-hybrid 103 SWTLEHHRRVVRSVIQLGGLNssKTTAEAVLKLMDEedrrQGLTAKMIEHHL 154 7******************643389*********962223699999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-6 | 98 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSCFEVEGNR GGTMTPISEW KLEQHKQFLD TFILIGGDKE QVGVHTALKA ELLSLAGCSC 60 RTFFPDFDIT SLEILQRRSQ ALFSSDEVTL DSLYVAPKKM SSSWTLEHHR RVVRSVIQLG 120 GLNSSKTTAE AVLKLMDEED RRQGLTAKMI EHHLVGLYGL QKETQRLMAF CEKEKEQSFW 180 DLRYLVRKGL YYVLFTKIKE NPHLRQHLKL LKQVKKETLI CELLDLYDDQ KP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08032.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34475 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 2e-06 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna08032.1-v1.0-hybrid |