PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07822.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 416aa    MW: 47168.7 Da    PI: 4.2784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07822.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.57.7e-2191373127
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee.v.ikevdiy.kvePwdLpkkvka....eekewyfFskrdkkyatgkrknratksg 81 
                              +G+rFhP+d+el+ ++L  k + +++++ +   ++e+d+y +vePw++ + +++    ++++++fF++ +k+   ++r nr + sg
  mrna07822.1-v1.0-hybrid   9 VGLRFHPSDQELIGHFLFIKNNPNSVPEMRsSfLREFDMYgEVEPWTIWE-ANGgpllDDQDLFFFTRLKKH---KNRINRRIGSG 90 
                              7*****************9999999544331349***998468*****73.222345578899999988775...4699**9**** PP

                      NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                              +W++  + k+v++k  +++ +g k+ L + +++ p+ ++  W+m+ey+
  mrna07822.1-v1.0-hybrid  91 TWSQGENYKPVYAKnnQETPIGKKTKLRYENKEVPE-QSGCWFMDEYS 137
                              *************9545555********99777777.8999******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-216150IPR003441NAC domain
PROSITE profilePS5100521.1097152IPR003441NAC domain
PfamPF023657.9E-149137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MMDRCTRVVG LRFHPSDQEL IGHFLFIKNN PNSVPEMRSS FLREFDMYGE VEPWTIWEAN  60
GGPLLDDQDL FFFTRLKKHK NRINRRIGSG TWSQGENYKP VYAKNNQETP IGKKTKLRYE  120
NKEVPEQSGC WFMDEYSAVD DGDYVICRLR ENPSKRPSPP SSKPSDKKRK CQHDPEPSKK  180
PKSTTNEARK TVSLNQRPNP ETQFDTMEMF HHDQEYETQQ YLLLEGTGLE EVQRDVLAPA  240
VSEQQHTCSS SFALLNTTND VFGSENDSGN AQLEDTDWLG DALEDVEGDS LFPALSEQQT  300
SFMSQMQDIP SQENIIESHI QSPHLPPIGS ESQQPADQTG LVISDPQVST NEEFSFAYDN  360
FSVPMDPAYN INSDEFSNYN FGDEFLSGGD DIGTADILQG SISFSELLED QNHEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167181KRKCQHDPEPSKKPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07822.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457372.10.0PREDICTED: NAC domain-containing protein 7-like
TrEMBLA0A2P6PH185e-81A0A2P6PH18_ROSCH; Putative transcription factor NAM family
STRINGXP_004309935.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.18e-16NAC-domain protein 101