PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna05172.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 698aa MW: 79576.6 Da PI: 7.0491

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna05172.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.4e-20	53	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 +fY+ +Ak++GFs+r+++++ + + +t+r+f+C + g+++ + ++ k++r+r+++r+gC+a +++ k+ +w+vt ++ mrna05172.1-v1.0-hybrid 53 EFYCGFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPAEDGKSQRNRKSSRCGCQAYMRIVKRVefdVPEWRVTGFS 138 6*************9998874556679***************9***************98887677789*** PP FAR1 83 leHnHela 90 + HnHel mrna05172.1-v1.0-hybrid 139 NVHNHELL 146 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-17	53	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-19	269	374	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.495	493	541	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-8	513	538	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-7	516	543	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MSEGASTRMD DLSQDDAGTI EETAEDSILS RQTCLNLVPV VGQRFASQDA AYEFYCGFAK 60 QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPAE DGKSQRNRKS SRCGCQAYMR 120 IVKRVEFDVP EWRVTGFSNV HNHELLKSSE VSQLHAYCSM SPDDKSRICM YAKAGMSVRQ 180 MMRLMELEKG VKLGCLTFTE VDVRNLLQSF RNVNKDNDAI DLIAMCKKMK DENPDFKYDF 240 KIDGHNRLEH IAWSYGSSIQ LYEKFGDAVV FDTTYRLDAY DMLLGIWLGV DNQGMICCFG 300 CVLLRDENVQ SFFWALKTSS MFLTLLIYAQ TFWWFMKGKT PQTILTDHNM WLKEAIAVVM 360 PQTRHAFCIW YIVEKFSEWF SALIGSRYNE WKADFDQLYN LQSAEEFEER WMEMVDRYGL 420 HTNKHAADIV NYSDRTGAKQ KLQQKLQRVC LKTGSPIESH AASVLTPYAF GKLQEELVLA 480 PQYASLPVDE FCFQVRHHTQ ADGGCKVIWV PSQEHISCSC CEFEFTGILC RHVLRVLSNN 540 NCFRIPNQYL PTRWCDVSSS STNTFQNAKD KSEKIQLLES MASTLVAESS ETEERLHVAY 600 EQIAVVLSRV KDLPSTTRKA IEGSSNCPPD FCPPDICPPN IMTLPEVEVD DGVVRFPIGN 660 SHDSVSSGKP KERRPKEVES NRKRTRQCAG PCCLSVQ*

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MSEGASTRMD DLSQDDAGTI EETAEDSILS RQTCLNLVPV VGQRFASQDA AYEFYCGFAK  60
QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPAE DGKSQRNRKS SRCGCQAYMR  120
IVKRVEFDVP EWRVTGFSNV HNHELLKSSE VSQLHAYCSM SPDDKSRICM YAKAGMSVRQ  180
MMRLMELEKG VKLGCLTFTE VDVRNLLQSF RNVNKDNDAI DLIAMCKKMK DENPDFKYDF  240
KIDGHNRLEH IAWSYGSSIQ LYEKFGDAVV FDTTYRLDAY DMLLGIWLGV DNQGMICCFG  300
CVLLRDENVQ SFFWALKTSS MFLTLLIYAQ TFWWFMKGKT PQTILTDHNM WLKEAIAVVM  360
PQTRHAFCIW YIVEKFSEWF SALIGSRYNE WKADFDQLYN LQSAEEFEER WMEMVDRYGL  420
HTNKHAADIV NYSDRTGAKQ KLQQKLQRVC LKTGSPIESH AASVLTPYAF GKLQEELVLA  480
PQYASLPVDE FCFQVRHHTQ ADGGCKVIWV PSQEHISCSC CEFEFTGILC RHVLRVLSNN  540
NCFRIPNQYL PTRWCDVSSS STNTFQNAKD KSEKIQLLES MASTLVAESS ETEERLHVAY  600
EQIAVVLSRV KDLPSTTRKA IEGSSNCPPD FCPPDICPPN IMTLPEVEVD DGVVRFPIGN  660
SHDSVSSGKP KERRPKEVES NRKRTRQCAG PCCLSVQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna05172.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004296256.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2P6QYY6	0.0	A0A2P6QYY6_ROSCH; Putative transcription factor FAR family
STRING	XP_004296256.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	mrna05172.1-v1.0-hybrid

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]