PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04917.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 264aa    MW: 28763.7 Da    PI: 4.6838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04917.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.4e-20141191255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +++GVr+++ +g+++AeIrdp++ng   r++lg++ tae+Aa a+++a+ k++g
  mrna04917.1-v1.0-hybrid 141 HFRGVRRRP-WGKYAAEIRDPKKNG--SRVWLGTYETAEDAALAYDQAAFKMRG 191
                              69*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-33140200IPR001471AP2/ERF domain
PfamPF008472.6E-14141191IPR001471AP2/ERF domain
SMARTSM003804.2E-40141205IPR001471AP2/ERF domain
PROSITE profilePS5103223.709141199IPR001471AP2/ERF domain
CDDcd000184.89E-29141201No hitNo description
SuperFamilySSF541714.71E-23141200IPR016177DNA-binding domain
PRINTSPR003673.6E-10142153IPR001471AP2/ERF domain
PRINTSPR003673.6E-10165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MFEEIDLESD FALLESIRQH LLDDNFDTTF DLEASSPTVS GSPPPIYCRS FSFGTLFSAE  60
NGSNSPLKGD SDCDDIALSG AVPDEFRASA VKTEPWEVVE VVEEERDTAS AVKTESREVT  120
EVVEEESVAE RETHAPSLGR HFRGVRRRPW GKYAAEIRDP KKNGSRVWLG TYETAEDAAL  180
AYDQAAFKMR GSKAKLNFPH LIGSGGSLPV RITPKRRSPE TYSSSSSSTS ESCSPKPKRQ  240
NLGVGPVAAD RGGVRWLEPS GDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-33139205369ATERF1
3gcc_A6e-33139205369ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04917.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024178769.11e-119ethylene-responsive transcription factor 1-like
SwissprotQ404791e-46ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A3S8T9221e-180A0A3S8T922_FRAAN; Transcription factor ERF71
STRINGXP_008232470.13e-97(Prunus mume)
STRINGEMJ049492e-97(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-33ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]