PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna04913.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ERF

Protein Properties

Length: 237aa MW: 25938.6 Da PI: 4.7218

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna04913.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.4	4.2e-19	82	132	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp++ng +r++lg++ tae+A a+++a+ +++g mrna04913.1-v1.0-hybrid 82 HFRGVRRRP-WGKYAAEIRDPKKNG--TRVWLGTYETAEDAGLAYDRAAFRMRG 132 69*****.*******9998..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	9.99E-30	82	142	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.1E-31	82	141	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.68E-22	82	141	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.024	82	140	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-36	82	146	IPR001471	AP2/ERF domain
Pfam	PF00847	3.9E-13	82	132	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-13	83	94	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-13	122	142	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
METESFSNSD WALLESIRQH LLDDDFDTQS AFFADSPSQS TSSSNCTEIS SSNVDIVEQN 60 NAFTTELDVA ARDDHAPSAP NHFRGVRRRP WGKYAAEIRD PKKNGTRVWL GTYETAEDAG 120 LAYDRAAFRM RGSKAKLNFP HLIGTHDMEV GRVLPKRASP EPSSPSSTMS SEDGSPKPKR 180 MRRSGGDSAA AKAKLDEAAG EVHVFQVDSF TFGDELLVED MVLLSPSECS DILSFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-31	81	140	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	2e-31	82	140	5	63	ATERF1
3gcc_A	2e-31	82	140	5	63	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna04913.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004308505.2	1e-175	PREDICTED: ethylene-responsive transcription factor ERF107-like
Swissprot	Q40479	2e-45	ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBL	A0A3Q8TB17	1e-139	A0A3Q8TB17_FRAAN; Transcription factor ERF69
STRING	XP_004308505.1	1e-174	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF512	33	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-39	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	mrna04913.1-v1.0-hybrid

Publications ? help Back to Top
Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells. Plant Cell Physiol., 2006. 47(4): p. 554-8 [PMID:16452120]