PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04228.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29453.4 Da    PI: 9.6995
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04228.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.6e-29959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+ rqvtfskRr+g++KKA+E+SvLCda+va+i+fs++gkl+ey++
  mrna04228.1-v1.0-hybrid  9 KRIENKISRQVTFSKRRTGLIKKAHEISVLCDADVALIVFSTKGKLFEYAT 59
                             79***********************************************86 PP
2K-box94.91.3e-31781754100
                    K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                              ++++   +++ + s+  e+ kL ++ie Lqr++R++ GedL++Lsl+eLq+Leqq++++lk++R++Kn+ ++e+++e+ kk++ lq
  mrna04228.1-v1.0-hybrid  78 RQSTGiPDSQPQGSWFMEFPKLAARIEILQRKIRNYTGEDLDPLSLRELQNLEQQIDTALKRVRARKNQAVHESLSEMHKKQRTLQ 163
                              5555545566677999********************************************************************** PP

                    K-box  89 eenkaLrkklee 100
                              e+n++L kkl+e
  mrna04228.1-v1.0-hybrid 164 EQNNSLAKKLKE 175
                              *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
CDDcd002651.15E-42279No hitNo description
SuperFamilySSF554556.15E-33280IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.60289179IPR002487Transcription factor, K-box
PfamPF014861.2E-2489173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRGKVQLKR IENKISRQVT FSKRRTGLIK KAHEISVLCD ADVALIVFST KGKLFEYATD  60
SSMDAILERY EQYSYAERQS TGIPDSQPQG SWFMEFPKLA ARIEILQRKI RNYTGEDLDP  120
LSLRELQNLE QQIDTALKRV RARKNQAVHE SLSEMHKKQR TLQEQNNSLA KKLKENEKLL  180
QEEPNDNQQP NPSTLVLMPT QQAPKSPALL SSLTIGGDFQ GRRDAMDEDV RDYQGRAETQ  240
PASSTVMPPW MVRHLNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-23186187MEF2 CHIMERA
6byy_B8e-23186187MEF2 CHIMERA
6byy_C8e-23186187MEF2 CHIMERA
6byy_D8e-23186187MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04228.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9700280.0FJ970028.1 Rosa hybrid cultivar APETALA1/FUL-like protein (FUL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304203.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotD7SMN61e-102FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A2P6S3N41e-163A0A2P6S3N4_ROSCH; Putative transcription factor MADS-MIKC family
TrEMBLC7BF511e-163C7BF51_ROSHC; APETALA1/FUL-like protein
STRINGXP_004304203.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-78AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]