PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03882.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 408aa    MW: 45971.2 Da    PI: 10.0898
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03882.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP135.83.6e-42852232135
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec..eaesss 79 
                               gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skti+WL++++  ai el ++      s++++ ++  e+++ +
  mrna03882.1-v1.0-hybrid  85 SGKKDRHSKIYTAQGPRDRRMRLSVQIARKFFDLQDMLGFDKASKTIDWLFTKSRSAINELKQQlvlrtcSTINSLSTsaESNEVV 170
                              68**************************************************************9999874444322222222333 PP

                      TCP  80 ssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                              s++ +   + ++ s+  +  +++++     + k sr +arararertr+k ri+ +
  mrna03882.1-v1.0-hybrid 171 SQTMQ---DLKSDSSIGRMINPRKNIRRYRVGKGSRDQARARARERTRQKLRIRLS 223
                              33332...23334444444444444445899********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.6E-3886218IPR005333Transcription factor, TCP
PROSITE profilePS5136936.75787145IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.191200217IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MTSTHDESSS SQPHHPHHDY NSSYFQDHDG VVLSYLLSQQ LDTDSSQSAD ISVAASNQGL  60
IMEEEKIQSS KKKRKAAAAP RKRSSGKKDR HSKIYTAQGP RDRRMRLSVQ IARKFFDLQD  120
MLGFDKASKT IDWLFTKSRS AINELKQQLV LRTCSTINSL STSAESNEVV SQTMQDLKSD  180
SSIGRMINPR KNIRRYRVGK GSRDQARARA RERTRQKLRI RLSCQANHDE ANPKDLGLLC  240
LGEEAEKHTN HELIEQGRTN SMMRNNADDH KTLMGRSISA RSRARFEDDG CEFPGFTGNW  300
GNKMQSIHPR KMTRNVTESF TGNNLLQVEN PSTPIMGLTS KYQEPSSTTT SRLSFSSSNS  360
QEQSYSGTYS NSCPINFMPN QDHNPNPIFI ATLISPDQNP GQFLKFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03882.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298309.10.0PREDICTED: transcription factor TCP18
TrEMBLA0A2P6R1X60.0A0A2P6R1X6_ROSCH; Putative transcription factor TCP family
STRINGXP_004298309.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-28TCP domain protein 12