PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03650.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 764aa    MW: 84005.9 Da    PI: 6.8672
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03650.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-10642667126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +ktelC+ +++tG C+y d C++aHg
  mrna03650.1-v1.0-hybrid 642 FKTELCNKWQETGDCPYKDHCQYAHG 667
                              79***********************9 PP
2zf-CCCH17.29.3e-06680704125
                              --S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                              ykte Cr  +++  C+yG rC+F H
  mrna03650.1-v1.0-hybrid 680 YKTEVCRMVLAGDVCPYGHRCHFRH 704
                              9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.816147IPR000315B-box-type zinc finger
CDDcd000211.66E-4339No hitNo description
PROSITE profilePS5101711.806274316IPR010402CCT domain
PfamPF062031.5E-8274311IPR010402CCT domain
Gene3DG3DSA:4.10.1000.105.9E-16638674IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-9638673IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7641668IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051641669IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-8642667IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-8675708IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-11675708IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4679706IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821679707IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MARICDFCST SSAAVHCKAD VAHLCLSCDS ELHSANQVVN RHPRTILCDS CNHLSAYDGC  60
LDHGGGGLMC HLCDRSHLVT TSPVHQRLSS SSYSYTGCPA AEDFAAIWGL QMNHDHISSA  120
SHVGSLDILG QILDLQRTQS TVPLGLCSNK TSQCPPSFTL HVDSDIEFSD KMQDQLRVSD  180
DDPHIPDDEY LAFLNLEELI GDEDDQDLIV KTQQLLDDPN LDTAAASKDG RTESSSLPAN  240
GSSCSLPSSV SCNTFSSSSM VSQGVKGEQV FDARANAMMR YKQKKHSRVY ERKIRYQRKK  300
AIADSRKRVR GGLKVTEMEM DVWGGQPPDG SKTAVEDWIG ERSFAMSRYD FNASEGKISA  360
EMIGNLFVFT VELKPRMQND VAYATASARI GTSAMSSPQP QPYGGGYNYG GAYSSSIFGP  420
KPSQSSSVGV GLYGVQSDSD TSQAYRNKLY QSLLVQNRQE MVNRHSLCLK RLHEAAEEAD  480
ALRRENSHLR NVNVELNKQL NLLIHASIQK EIEASSSSAA SQPRSPFGIV NGIRGLSIDG  540
KSSTHEEEDL SDYSPTSDVM DNEEAENVNV ERIALPKSIS VRSSGYVKLP PLSAATKAAA  600
RTRIAARSRT AKPVSASQKV YVQGGKKEEV PLELEVFNQG MFKTELCNKW QETGDCPYKD  660
HCQYAHGVKE LRPVIRHPRY KTEVCRMVLA GDVCPYGHRC HFRHALTEEE KQLAGGNNKL  720
NRPISHHQWG FLGYFVGNGD DEGGGGWRLA ATRRRELIAK TTY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-20642708470Butyrate response factor 2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282298QKKHSRVYERKIRYQRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03650.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464074.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
TrEMBLA0A2P6R1F80.0A0A2P6R1F8_ROSCH; Putative transcription factor C3H family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.16e-72C3H family protein